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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS19425 and PFLU_RS19430 are separated by 1 nucleotides
PFLU_RS19430 and PFLU_RS19435 overlap by 8 nucleotides
PFLU_RS19435 and PFLU_RS19440 are separated by 104 nucleotides
PFLU_RS19440 and PFLU_RS19445 are separated by 107 nucleotides
PFLU_RS19425: PFLU_RS19425 - efflux RND transporter periplasmic adaptor subunit, at 4,391,733 to 4,392,902
_RS19425
PFLU_RS19430: PFLU_RS19430 - MacB family efflux pump subunit, at 4,392,904 to 4,394,874
_RS19430
PFLU_RS19435: PFLU_RS19435 - efflux transporter outer membrane subunit, at 4,394,867 to 4,396,270
_RS19435
PFLU_RS19440: PFLU_RS19440 - alpha/beta fold hydrolase, at 4,396,375 to 4,397,124
_RS19440
PFLU_RS19445: PFLU_RS19445 - FadR family transcriptional regulator, at 4,397,232 to 4,397,999
_RS19445
Group
Condition
PFLU
_RS19425
PFLU
_RS19430
PFLU
_RS19435
PFLU
_RS19440
PFLU
_RS19445
carbon source
NAG (C)
-0.6
-0.1
+0.0
-0.3
-0.4
carbon source
acetate (C)
-0.2
-0.1
-0.4
+0.1
-0.1
carbon source
Trisodium citrate (C)
+0.1
+0.0
-0.2
-0.3
-0.2
carbon source
L-Arabinose (C)
-0.2
+0.1
-1.1
+0.1
+0.7
carbon source
acetate (C)
-0.7
+0.2
-0.2
-0.0
+0.3
carbon source
D-Glucose (C)
-0.2
+0.1
-0.1
-0.0
-0.3
carbon source
NAG (C); with MOPS
-0.1
+0.1
-0.3
-0.6
+0.5
carbon source
D,L-Lactate (C)
+0.1
-0.0
-0.4
+0.1
-0.1
carbon source
NAG (C)
-0.4
-0.1
+0.2
-0.2
+0.2
carbon source
acetate (C)
-0.2
-0.1
+0.3
-0.0
-0.2
carbon source
D-Glucose (C); with MOPS
-0.4
-0.1
-0.1
+0.0
+0.4
carbon source
D-Glucose (C); with MOPS
+0.2
+0.0
-0.4
+0.1
+0.1
carbon source
succinate (C); with MOPS
-0.2
-0.0
+0.2
-0.2
+0.4
carbon source
D-Xylose (C)
-0.1
-0.0
+0.4
-0.3
+0.0
carbon source
succinate (C); with MOPS
-0.1
+0.2
-0.1
-0.3
+0.5
carbon source
L-Arabinose (C)
-0.1
+0.2
-0.1
-0.3
+0.5
carbon source
Trisodium citrate (C); with MOPS
-0.3
+0.1
+0.3
+0.1
+0.2
carbon source
D-Glucose (C); with MOPS
-0.2
-0.0
+0.1
+0.2
+0.3
carbon source
succinate (C); with MOPS
+0.2
+0.0
-0.2
+0.1
+0.2
carbon source
succinate (C)
-0.1
-0.1
+0.0
+0.0
+0.5
carbon source
D-Glucose (C)
+0.0
+0.1
-0.1
-0.0
+0.4
carbon source
acetate (C)
-0.2
-0.1
+0.3
+0.1
+0.3
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.0
+0.1
-0.1
+0.4
carbon source
L-Arabinose (C)
-0.2
-0.2
+0.1
-0.1
+0.8
carbon source
succinate (C)
+0.0
+0.1
-0.2
-0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.0
-0.2
+0.1
+0.6
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.1
+0.0
+0.3
carbon source
succinate (C)
+0.2
+0.1
+0.2
+0.1
+0.3
carbon source
L-Arabinose (C); with MOPS
+0.5
+0.3
+0.1
+0.4
+0.0
carbon source
NAG (C); with MOPS
+0.1
+0.2
+0.1
+0.4
+0.6
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