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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS18900 and PFLU_RS18905 are separated by 15 nucleotides
PFLU_RS18905 and PFLU_RS18910 overlap by 4 nucleotides
PFLU_RS18910 and PFLU_RS18915 are separated by 143 nucleotides
PFLU_RS18915 and PFLU_RS18920 overlap by 1 nucleotides
PFLU_RS18900: PFLU_RS18900 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,272,049 to 4,273,251
_RS18900
PFLU_RS18905: PFLU_RS18905 - efflux transporter outer membrane subunit, at 4,273,267 to 4,274,718
_RS18905
PFLU_RS18910: PFLU_RS18910 - MarR family transcriptional regulator, at 4,274,715 to 4,275,188
_RS18910
PFLU_RS18915: PFLU_RS18915 - translocation/assembly module TamB, at 4,275,332 to 4,279,003
_RS18915
PFLU_RS18920: PFLU_RS18920 - outer membrane protein assembly factor, at 4,279,003 to 4,280,730
_RS18920
Group
Condition
PFLU
_RS18900
PFLU
_RS18905
PFLU
_RS18910
PFLU
_RS18915
PFLU
_RS18920
carbon source
acetate (C)
+0.1
+0.0
-2.7
-1.7
-1.7
carbon source
NAG (C); with MOPS
-0.1
-0.1
-1.5
-1.5
-1.2
carbon source
acetate (C)
+0.3
-0.1
-1.6
-1.6
-1.0
carbon source
NAG (C); with MOPS
+0.0
-0.2
-1.3
-1.2
-1.0
carbon source
L-Arabinose (C)
-0.0
-0.1
-0.2
-1.6
-1.6
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.2
-0.7
-1.5
-1.1
carbon source
NAG (C); with MOPS
+0.3
-0.1
-1.4
-1.1
-1.1
carbon source
L-Arabinose (C); with MOPS
-0.0
-0.1
-0.8
-1.1
-1.4
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.1
-0.5
-1.1
-1.4
carbon source
acetate (C)
+0.3
+0.2
-0.2
-1.6
-1.8
carbon source
L-Arabinose (C)
+0.3
-0.0
-0.6
-1.4
-1.2
carbon source
D-Glucose (C)
-0.0
-0.3
-0.5
-0.8
-0.8
carbon source
L-Arabinose (C)
+0.1
-0.0
-0.1
-1.1
-1.2
carbon source
D-Glucose (C)
+0.2
-0.1
-0.9
-0.7
-0.7
carbon source
Trisodium citrate (C)
+0.1
-0.3
-0.5
-0.6
-0.8
carbon source
Trisodium citrate (C)
+0.0
-0.0
-0.7
-0.8
-0.6
carbon source
Trisodium citrate (C)
+0.3
-0.2
-0.6
-0.6
-0.8
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.1
-0.4
-0.7
-0.7
carbon source
D-Glucose (C)
+0.1
-0.0
-0.6
-0.6
-0.8
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.2
-0.7
-0.4
-0.6
carbon source
succinate (C)
+0.1
+0.0
-1.3
-0.3
-0.3
carbon source
D-Glucose (C); with MOPS
+0.3
-0.0
-0.9
-0.4
-0.8
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.2
-0.3
-0.6
-0.7
carbon source
D-Glucose (C); with MOPS
+0.1
-0.0
-0.5
-0.5
-0.6
carbon source
succinate (C); with MOPS
+0.0
-0.2
-0.8
-0.3
-0.3
carbon source
succinate (C)
-0.0
-0.2
-0.4
-0.4
-0.6
carbon source
succinate (C)
+0.3
-0.3
-0.5
-0.5
-0.5
carbon source
succinate (C); with MOPS
+0.1
-0.0
-0.4
-0.6
-0.5
carbon source
succinate (C); with MOPS
+0.3
-0.1
-0.6
-0.5
-0.5
carbon source
D-Glucose (C); with MOPS
+0.3
+0.0
-0.4
-0.4
-0.8
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