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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS18690 and PFLU_RS18695 are separated by 133 nucleotides
PFLU_RS18695 and PFLU_RS18700 are separated by 120 nucleotides
PFLU_RS18700 and PFLU_RS18705 are separated by 81 nucleotides
PFLU_RS18705 and PFLU_RS18710 are separated by 324 nucleotides
PFLU_RS18690: PFLU_RS18690 - outer membrane beta-barrel protein, at 4,229,648 to 4,230,400
_RS18690
PFLU_RS18695: PFLU_RS18695 - arylamine N-acetyltransferase, at 4,230,534 to 4,231,361
_RS18695
PFLU_RS18700: PFLU_RS18700 - hypothetical protein, at 4,231,482 to 4,231,718
_RS18700
PFLU_RS18705: PFLU_RS18705 - hypothetical protein, at 4,231,800 to 4,232,000
_RS18705
PFLU_RS18710: PFLU_RS18710 - DUF3087 domain-containing protein, at 4,232,325 to 4,232,846
_RS18710
Group
Condition
PFLU
_RS18690
PFLU
_RS18695
PFLU
_RS18700
PFLU
_RS18705
PFLU
_RS18710
carbon source
acetate (C)
+0.2
+0.1
-1.7
-0.3
-0.7
carbon source
D-Glucose (C)
+0.1
+0.0
-1.4
-0.3
-0.0
carbon source
L-Arabinose (C)
+0.1
+0.1
-2.1
+0.0
+0.4
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
-0.7
-0.3
-0.2
carbon source
succinate (C); with MOPS
-0.1
+0.0
-0.8
+0.1
-0.2
carbon source
acetate (C)
-0.1
-0.0
+0.0
-0.4
-0.1
carbon source
NAG (C); with MOPS
+0.0
+0.1
-0.7
+0.0
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.2
+0.1
-1.0
+0.1
carbon source
D,L-Lactate (C)
-0.3
-0.1
+0.2
-0.3
-0.1
carbon source
succinate (C); with MOPS
+0.2
+0.2
-0.2
-0.3
-0.2
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.0
+0.5
-0.3
-0.2
carbon source
succinate (C)
-0.1
-0.0
+0.5
-0.4
-0.1
carbon source
Trisodium citrate (C)
+0.1
+0.3
-0.2
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.2
-0.0
+0.8
-0.6
-0.1
carbon source
NAG (C); with MOPS
+0.0
+0.1
-0.2
+0.4
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
+0.3
-0.1
+0.0
carbon source
NAG (C)
-0.0
-0.0
+0.4
+0.2
-0.1
carbon source
succinate (C)
+0.4
-0.1
+0.3
-0.0
+0.0
carbon source
L-Arabinose (C)
+0.1
-0.1
+0.5
+0.2
-0.1
carbon source
acetate (C)
-0.2
+0.0
+0.6
+0.3
+0.0
carbon source
NAG (C)
+0.0
-0.1
+0.8
+0.1
-0.0
carbon source
D-Glucose (C)
+0.0
+0.1
+0.5
+0.4
-0.1
carbon source
D-Glucose (C)
+0.1
+0.1
+0.8
+0.2
-0.2
carbon source
D-Xylose (C)
-0.0
+0.1
+0.8
+0.3
+0.0
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.5
+0.2
+0.2
carbon source
acetate (C)
-0.1
+0.0
+0.9
+0.3
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.3
+0.9
+0.2
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.2
+1.0
+0.4
+0.3
carbon source
L-Arabinose (C)
+0.2
+0.0
+2.1
-0.2
+0.1
carbon source
acetate (C)
+0.5
+0.4
+0.7
+0.8
-0.0
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