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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS18050 and PFLU_RS18055 are separated by 181 nucleotides
PFLU_RS18055 and PFLU_RS18060 are separated by 28 nucleotides
PFLU_RS18060 and PFLU_RS18065 overlap by 4 nucleotides
PFLU_RS18065 and PFLU_RS18070 are separated by 170 nucleotides
PFLU_RS18050: PFLU_RS18050 - LysR family transcriptional regulator, at 4,096,401 to 4,097,282
_RS18050
PFLU_RS18055: PFLU_RS18055 - hydrolase, at 4,097,464 to 4,098,081
_RS18055
PFLU_RS18060: PFLU_RS18060 - amidohydrolase, at 4,098,110 to 4,099,948
_RS18060
PFLU_RS18065: PFLU_RS18065 - antibiotic biosynthesis monooxygenase, at 4,099,945 to 4,100,535
_RS18065
PFLU_RS18070: PFLU_RS18070 - hypothetical protein, at 4,100,706 to 4,101,305
_RS18070
Group
Condition
PFLU
_RS18050
PFLU
_RS18055
PFLU
_RS18060
PFLU
_RS18065
PFLU
_RS18070
carbon source
succinate (C)
-0.9
N.D.
-0.3
+0.2
-0.1
carbon source
NAG (C); with MOPS
-0.8
N.D.
-0.0
-0.3
-0.0
carbon source
L-Arabinose (C)
-0.0
N.D.
-0.6
-0.4
-0.1
carbon source
D-Glucose (C); with MOPS
-0.2
N.D.
-0.2
-0.5
+0.2
carbon source
D-Glucose (C)
-0.3
N.D.
-0.3
-0.2
+0.1
carbon source
D-Glucose (C); with MOPS
-0.2
N.D.
-0.1
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.1
N.D.
-0.1
-0.0
-0.4
carbon source
L-Arabinose (C); with MOPS
+0.1
N.D.
-0.1
-0.6
+0.1
carbon source
NAG (C); with MOPS
-0.3
N.D.
+0.2
-0.2
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.8
N.D.
-0.2
+0.3
+0.3
carbon source
Trisodium citrate (C); with MOPS
+0.3
N.D.
-0.2
-0.0
-0.5
carbon source
Trisodium citrate (C)
+0.0
N.D.
-0.2
-0.2
+0.1
carbon source
D-Xylose (C)
+0.1
N.D.
-0.3
-0.0
-0.1
carbon source
NAG (C); with MOPS
+0.0
N.D.
-0.3
+0.1
-0.1
carbon source
NAG (C)
+0.2
N.D.
-0.0
-0.1
-0.2
carbon source
acetate (C)
+0.2
N.D.
+0.0
-0.2
-0.1
carbon source
D-Glucose (C)
-0.1
N.D.
+0.1
+0.2
-0.3
carbon source
D-Glucose (C)
-0.2
N.D.
-0.0
+0.4
-0.1
carbon source
succinate (C)
-0.4
N.D.
+0.4
+0.1
-0.0
carbon source
acetate (C)
-0.4
N.D.
-0.6
+0.8
+0.3
carbon source
succinate (C); with MOPS
+0.1
N.D.
-0.1
+0.3
-0.0
carbon source
succinate (C); with MOPS
+0.3
N.D.
-0.0
-0.1
+0.2
carbon source
acetate (C)
+0.6
N.D.
-0.1
-0.1
+0.0
carbon source
succinate (C)
-0.2
N.D.
+0.1
+0.3
+0.1
carbon source
acetate (C)
+0.3
N.D.
+0.1
+0.4
-0.3
carbon source
L-Arabinose (C)
+0.4
N.D.
+0.2
-0.1
+0.3
carbon source
L-Arabinose (C); with MOPS
+0.3
N.D.
+0.1
+0.3
+0.0
carbon source
L-Arabinose (C)
-0.1
N.D.
+0.2
+0.4
+0.3
carbon source
succinate (C); with MOPS
+0.2
N.D.
+0.2
+0.4
+0.0
carbon source
acetate (C)
+0.5
N.D.
+0.5
+0.3
-0.0
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