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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS17900 and PFLU_RS17905 overlap by 4 nucleotides
PFLU_RS17905 and PFLU_RS17910 are separated by 31 nucleotides
PFLU_RS17910 and PFLU_RS17915 overlap by 23 nucleotides
PFLU_RS17915 and PFLU_RS17920 are separated by 1 nucleotides
PFLU_RS17900: PFLU_RS17900 - acetyltransferase, at 4,063,776 to 4,064,345
_RS17900
PFLU_RS17905: PFLU_RS17905 - glycosyltransferase, at 4,064,342 to 4,065,487
_RS17905
PFLU_RS17910: PFLU_RS17910 - O-antigen ligase family protein, at 4,065,519 to 4,066,841
_RS17910
PFLU_RS17915: PFLU_RS17915 - glycosyltransferase family 4 protein, at 4,066,819 to 4,068,051
_RS17915
PFLU_RS17920: PFLU_RS17920 - acyltransferase, at 4,068,053 to 4,068,616
_RS17920
Group
Condition
PFLU
_RS17900
PFLU
_RS17905
PFLU
_RS17910
PFLU
_RS17915
PFLU
_RS17920
carbon source
L-Arabinose (C)
-0.5
-0.3
+0.3
-0.2
-1.3
carbon source
acetate (C)
+0.3
+0.1
+0.4
-1.4
-0.9
carbon source
D-Glucose (C)
-0.1
-0.7
+0.0
-0.3
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.2
-0.4
+0.2
-0.2
-0.6
carbon source
acetate (C)
-0.4
+0.0
-0.1
+0.2
-0.5
carbon source
D-Glucose (C)
+0.0
-0.4
+0.1
-0.1
-0.4
carbon source
L-Arabinose (C)
-0.2
+0.2
+0.3
+0.0
-0.9
carbon source
D-Glucose (C); with MOPS
-0.2
+0.1
+0.1
+0.0
-0.6
carbon source
succinate (C)
+0.1
-0.2
+0.1
-0.0
-0.6
carbon source
L-Arabinose (C)
-0.4
-0.2
+0.3
-0.4
+0.2
carbon source
D-Glucose (C); with MOPS
-0.2
-0.5
+0.4
-0.1
+0.0
carbon source
NAG (C); with MOPS
+0.1
-0.1
+0.4
-0.1
-0.5
carbon source
D-Glucose (C); with MOPS
+0.2
-0.1
+0.4
+0.2
-0.9
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.4
+0.3
+0.2
-0.2
carbon source
succinate (C); with MOPS
-0.1
-0.4
+0.3
+0.1
+0.1
carbon source
NAG (C)
+0.0
+0.4
+0.3
-0.3
-0.4
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.3
+0.2
-0.3
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.4
+0.3
-0.0
+0.3
carbon source
succinate (C); with MOPS
-0.0
-0.2
+0.2
-0.0
+0.4
carbon source
Trisodium citrate (C)
-0.1
-0.3
+0.3
-0.0
+0.4
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.1
+0.4
+0.2
-0.2
carbon source
succinate (C)
+0.0
-0.3
+0.1
+0.3
+0.5
carbon source
NAG (C)
+0.3
+0.5
+0.3
-0.1
-0.4
carbon source
acetate (C)
-0.2
+0.4
+0.0
+0.3
+0.1
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.4
+0.1
-0.2
carbon source
succinate (C); with MOPS
+0.1
-0.1
+0.2
-0.1
+0.7
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.3
+0.5
+0.0
-0.1
carbon source
acetate (C)
+0.2
-0.0
+0.7
+0.6
-0.2
carbon source
Trisodium citrate (C)
+0.4
-0.0
+0.4
+0.0
+0.5
carbon source
acetate (C)
+0.4
+0.1
+0.6
+0.8
-0.4
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