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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS17705 and PFLU_RS17710 overlap by 4 nucleotides
PFLU_RS17710 and PFLU_RS17715 are separated by 97 nucleotides
PFLU_RS17715 and PFLU_RS17720 are separated by 188 nucleotides
PFLU_RS17720 and PFLU_RS17725 overlap by 59 nucleotides
PFLU_RS17705: PFLU_RS17705 - sigma-70 family RNA polymerase sigma factor, at 4,019,776 to 4,020,288
_RS17705
PFLU_RS17710: PFLU_RS17710 - DUF4880 domain-containing protein, at 4,020,285 to 4,021,235
_RS17710
PFLU_RS17715: PFLU_RS17715 - TonB-dependent siderophore receptor, at 4,021,333 to 4,023,795
_RS17715
PFLU_RS17720: PFLU_RS17720 - AraC family transcriptional regulator, at 4,023,984 to 4,024,877
_RS17720
PFLU_RS17725: PFLU_RS17725 - LysE family translocator, at 4,024,819 to 4,025,406
_RS17725
Group
Condition
PFLU
_RS17705
PFLU
_RS17710
PFLU
_RS17715
PFLU
_RS17720
PFLU
_RS17725
carbon source
L-Arabinose (C); with MOPS
-1.0
-0.2
+0.0
-0.1
-0.2
carbon source
L-Arabinose (C)
-0.8
-0.2
+0.1
+0.2
-0.0
carbon source
NAG (C); with MOPS
-0.1
-0.0
-0.1
-0.2
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.1
+0.0
-0.1
-0.1
carbon source
acetate (C)
+0.0
-0.1
-0.1
-0.0
-0.1
carbon source
D-Glucose (C)
-0.1
-0.1
-0.0
-0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.4
+0.1
-0.1
+0.1
carbon source
succinate (C)
+0.0
-0.1
+0.1
-0.1
-0.0
carbon source
D-Glucose (C); with MOPS
-0.1
-0.1
+0.1
+0.1
-0.2
carbon source
D-Glucose (C); with MOPS
+0.2
+0.1
+0.0
+0.0
-0.5
carbon source
D-Xylose (C)
-0.0
-0.1
-0.1
+0.0
+0.1
carbon source
succinate (C)
-0.3
-0.1
-0.1
+0.1
+0.4
carbon source
succinate (C); with MOPS
-0.1
-0.1
+0.1
+0.0
+0.0
carbon source
succinate (C); with MOPS
-0.2
-0.1
+0.1
-0.1
+0.2
carbon source
NAG (C); with MOPS
-0.3
+0.3
-0.0
-0.1
+0.1
carbon source
succinate (C)
+0.2
-0.1
+0.1
-0.0
-0.2
carbon source
acetate (C)
-0.2
+0.1
-0.0
+0.1
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.1
+0.1
-0.1
-0.1
carbon source
Trisodium citrate (C)
-0.1
-0.2
+0.1
-0.0
+0.3
carbon source
Trisodium citrate (C)
-0.1
+0.1
+0.1
-0.2
+0.1
carbon source
NAG (C)
+0.0
-0.0
-0.1
-0.1
+0.2
carbon source
acetate (C)
-0.7
-0.0
+0.0
+0.3
+0.6
carbon source
D,L-Lactate (C)
+0.1
+0.1
-0.2
+0.0
+0.1
carbon source
NAG (C); with MOPS
+0.1
-0.1
-0.0
+0.0
+0.2
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.1
-0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.5
+0.1
+0.1
-0.2
-0.1
carbon source
acetate (C)
+0.2
-0.1
-0.1
-0.0
+0.3
carbon source
L-Arabinose (C)
+0.4
-0.3
-0.0
-0.1
+0.5
carbon source
succinate (C); with MOPS
+0.2
+0.0
+0.1
-0.0
+0.4
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.0
+0.1
+0.1
+0.3
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