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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS17425 and PFLU_RS17430 overlap by 4 nucleotides
PFLU_RS17430 and PFLU_RS17435 overlap by 4 nucleotides
PFLU_RS17435 and PFLU_RS17440 are separated by 0 nucleotides
PFLU_RS17440 and PFLU_RS17445 overlap by 17 nucleotides
PFLU_RS17425: PFLU_RS17425 - ABC transporter ATP-binding protein, at 3,962,513 to 3,963,544
_RS17425
PFLU_RS17430: PFLU_RS17430 - ABC transporter permease subunit, at 3,963,541 to 3,964,335
_RS17430
PFLU_RS17435: PFLU_RS17435 - ABC transporter permease, at 3,964,332 to 3,965,150
_RS17435
PFLU_RS17440: PFLU_RS17440 - extracellular solute-binding protein, at 3,965,151 to 3,966,155
_RS17440
PFLU_RS17445: PFLU_RS17445 - LacI family DNA-binding transcriptional regulator, at 3,966,139 to 3,967,158
_RS17445
Group
Condition
PFLU
_RS17425
PFLU
_RS17430
PFLU
_RS17435
PFLU
_RS17440
PFLU
_RS17445
carbon source
L-Arabinose (C)
-0.2
-0.4
-0.3
-0.1
-1.1
carbon source
acetate (C)
-0.5
-0.7
-0.1
-0.1
-0.5
carbon source
NAG (C); with MOPS
+0.2
-0.2
+0.1
-0.4
-1.0
carbon source
NAG (C); with MOPS
+0.3
-0.1
+0.0
-0.3
-1.0
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.1
+0.1
-0.6
-0.7
carbon source
NAG (C)
-0.1
-0.1
-0.2
-0.3
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.1
-0.1
-0.2
-0.3
carbon source
acetate (C)
-0.1
-0.3
-0.1
+0.2
-0.2
carbon source
acetate (C)
-0.3
+0.1
+0.2
-0.3
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.1
-0.4
-0.1
-0.2
carbon source
acetate (C)
-0.1
-0.2
-0.3
-0.1
+0.3
carbon source
NAG (C); with MOPS
+0.2
-0.3
+0.5
-0.5
-0.3
carbon source
Trisodium citrate (C)
+0.2
+0.1
-0.0
-0.3
-0.4
carbon source
succinate (C); with MOPS
+0.1
-0.3
+0.1
+0.1
-0.3
carbon source
D-Glucose (C)
-0.0
+0.0
-0.1
+0.3
-0.6
carbon source
succinate (C)
+0.2
-0.1
+0.1
-0.1
-0.4
carbon source
Trisodium citrate (C)
+0.3
-0.1
-0.4
+0.3
-0.4
carbon source
NAG (C)
+0.2
+0.0
+0.1
-0.2
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.1
-0.2
-0.2
+0.3
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.2
+0.1
-0.4
carbon source
succinate (C)
+0.1
-0.2
-0.1
-0.1
+0.3
carbon source
Trisodium citrate (C)
+0.3
+0.1
-0.1
+0.0
-0.1
carbon source
D-Xylose (C)
-0.2
+0.1
+0.0
+0.0
+0.3
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.0
+0.1
+0.1
-0.2
carbon source
succinate (C); with MOPS
+0.1
+0.2
+0.3
+0.2
-0.5
carbon source
D-Glucose (C); with MOPS
+0.2
+0.1
+0.6
+0.0
-0.4
carbon source
D-Glucose (C)
+0.4
+0.1
+0.2
+0.4
-0.6
carbon source
acetate (C)
+0.1
+0.0
+0.3
-0.1
+0.3
carbon source
D-Glucose (C); with MOPS
+0.3
+0.3
-0.3
-0.0
+0.3
carbon source
D-Glucose (C); with MOPS
+0.2
+0.2
+0.2
+0.1
+0.1
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