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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS17095 and PFLU_RS17100 are separated by 493 nucleotides
PFLU_RS17100 and PFLU_RS17105 are separated by 310 nucleotides
PFLU_RS17105 and PFLU_RS17110 are separated by 5 nucleotides
PFLU_RS17110 and PFLU_RS17115 overlap by 4 nucleotides
PFLU_RS17095: PFLU_RS17095 - NAD-glutamate dehydrogenase, at 3,875,071 to 3,879,930
_RS17095
PFLU_RS17100: PFLU_RS17100 - hypothetical protein, at 3,880,424 to 3,880,777
_RS17100
PFLU_RS17105: PFLU_RS17105 - MoxR family ATPase, at 3,881,088 to 3,882,047
_RS17105
PFLU_RS17110: PFLU_RS17110 - DUF58 domain-containing protein, at 3,882,053 to 3,882,985
_RS17110
PFLU_RS17115: PFLU_RS17115 - DUF4381 domain-containing protein, at 3,882,982 to 3,883,476
_RS17115
Group
Condition
PFLU
_RS17095
PFLU
_RS17100
PFLU
_RS17105
PFLU
_RS17110
PFLU
_RS17115
carbon source
succinate (C); with MOPS
+0.1
-1.0
+0.4
-0.2
+0.2
carbon source
D-Glucose (C); with MOPS
+0.4
-1.7
+0.4
+0.7
+0.3
carbon source
NAG (C)
-0.0
+0.5
-0.3
+0.2
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.8
+0.3
+0.5
+0.4
carbon source
succinate (C)
+0.2
-0.3
+0.4
+0.2
+0.3
carbon source
succinate (C); with MOPS
+0.2
-0.5
+0.1
+0.7
+0.4
carbon source
D-Glucose (C); with MOPS
+0.2
-0.7
+0.7
+0.6
+0.2
carbon source
succinate (C)
+0.2
-0.2
+0.4
+0.2
+0.4
carbon source
D-Glucose (C)
+0.5
-1.0
+0.8
+0.2
+0.5
carbon source
D-Glucose (C)
+0.3
-0.9
+0.7
+0.4
+0.6
carbon source
acetate (C)
+0.1
+0.6
+0.2
+0.3
+0.3
carbon source
D-Glucose (C); with MOPS
+0.3
-0.2
+0.5
+0.3
+0.7
carbon source
Trisodium citrate (C); with MOPS
+0.4
-0.4
+0.7
+0.4
+0.6
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.0
+0.7
+0.7
+0.1
carbon source
D-Glucose (C)
+0.1
+0.3
+0.8
+0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.4
-0.8
+0.8
+0.6
+0.9
carbon source
acetate (C)
+0.5
-1.9
+1.4
+1.4
+0.9
carbon source
Trisodium citrate (C)
+0.3
-0.2
+0.7
+0.8
+0.8
carbon source
Trisodium citrate (C)
+0.3
+0.0
+0.6
+0.9
+0.7
carbon source
Trisodium citrate (C)
+0.4
+0.0
+0.5
+1.2
+0.4
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.8
+0.7
+0.8
carbon source
NAG (C); with MOPS
+0.2
-0.4
+0.8
+1.3
+1.1
carbon source
L-Arabinose (C); with MOPS
+0.4
-0.1
+0.9
+1.0
+1.1
carbon source
NAG (C); with MOPS
+0.4
+0.0
+1.1
+1.2
+0.9
carbon source
acetate (C)
+0.6
-1.0
+1.1
+1.7
+1.3
carbon source
L-Arabinose (C); with MOPS
+0.4
+0.4
+1.1
+1.0
+1.1
carbon source
L-Arabinose (C)
+0.3
-0.6
+1.5
+1.3
+1.5
carbon source
L-Arabinose (C)
+0.3
-0.6
+1.5
+1.5
+1.5
carbon source
L-Arabinose (C)
+0.2
+0.0
+1.5
+0.9
+1.7
carbon source
acetate (C)
+0.3
-0.5
+1.2
+1.8
+1.6
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