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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS16985 and PFLU_RS16990 are separated by 145 nucleotides
PFLU_RS16990 and PFLU_RS16995 are separated by 0 nucleotides
PFLU_RS16995 and PFLU_RS17000 are separated by 157 nucleotides
PFLU_RS17000 and PFLU_RS17005 overlap by 45 nucleotides
PFLU_RS16985: PFLU_RS16985 - GFA family protein, at 3,851,816 to 3,852,340
_RS16985
PFLU_RS16990: PFLU_RS16990 - HAMP domain-containing protein, at 3,852,486 to 3,853,763
_RS16990
PFLU_RS16995: PFLU_RS16995 - response regulator, at 3,853,764 to 3,854,471
_RS16995
PFLU_RS17000: PFLU_RS17000 - MFS transporter, at 3,854,629 to 3,855,828
_RS17000
PFLU_RS17005: PFLU_RS17005 - tRNA hydroxylase, at 3,855,784 to 3,856,386
_RS17005
Group
Condition
PFLU
_RS16985
PFLU
_RS16990
PFLU
_RS16995
PFLU
_RS17000
PFLU
_RS17005
carbon source
L-Arabinose (C)
-0.4
+0.1
+0.2
-0.1
-1.6
carbon source
acetate (C)
-0.0
-0.3
+0.0
-0.2
-0.8
carbon source
L-Arabinose (C); with MOPS
-0.3
-0.1
-0.1
+0.1
-0.2
carbon source
D-Glucose (C); with MOPS
-0.2
+0.0
+0.0
-0.1
-0.3
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.1
-0.5
+0.0
+0.0
carbon source
NAG (C); with MOPS
-0.1
-0.1
+0.2
+0.0
-0.4
carbon source
D-Glucose (C)
+0.1
+0.0
+0.2
-0.1
-0.6
carbon source
NAG (C)
+0.1
-0.0
+0.0
+0.0
-0.4
carbon source
D-Glucose (C); with MOPS
+0.0
-0.1
+0.2
+0.1
-0.5
carbon source
acetate (C)
-0.1
-0.0
-0.1
+0.1
-0.1
carbon source
NAG (C); with MOPS
-0.1
+0.1
+0.0
-0.1
-0.2
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.2
+0.1
-0.1
-0.3
carbon source
succinate (C)
-0.2
+0.0
+0.2
-0.1
-0.1
carbon source
D-Glucose (C)
-0.1
-0.0
+0.2
+0.1
-0.2
carbon source
D-Xylose (C)
+0.2
+0.0
+0.2
-0.1
-0.4
carbon source
succinate (C); with MOPS
-0.1
+0.1
+0.2
-0.0
-0.3
carbon source
D-Glucose (C); with MOPS
+0.1
-0.1
+0.2
+0.1
-0.3
carbon source
L-Arabinose (C)
-0.1
-0.3
+0.4
+0.1
-0.1
carbon source
succinate (C); with MOPS
-0.2
-0.0
+0.3
-0.0
-0.0
carbon source
D-Glucose (C)
-0.3
+0.1
+0.1
+0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.1
-0.0
+0.2
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.2
+0.1
-0.0
-0.3
carbon source
NAG (C); with MOPS
-0.1
+0.2
-0.0
-0.0
+0.2
carbon source
D,L-Lactate (C)
-0.0
+0.2
+0.1
+0.0
-0.0
carbon source
acetate (C)
-0.7
+0.3
+0.3
-0.2
+0.6
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.1
+0.3
+0.1
-0.3
carbon source
Trisodium citrate (C)
-0.0
+0.2
+0.3
+0.3
-0.3
carbon source
succinate (C)
-0.0
+0.3
+0.2
+0.0
+0.1
carbon source
acetate (C)
-0.3
+0.3
-0.0
+0.1
+0.6
carbon source
L-Arabinose (C)
+0.1
-0.3
+0.4
-0.0
+0.9
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