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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS16860 and PFLU_RS16865 overlap by 4 nucleotides
PFLU_RS16865 and PFLU_RS16870 are separated by 97 nucleotides
PFLU_RS16870 and PFLU_RS16875 are separated by 218 nucleotides
PFLU_RS16875 and PFLU_RS16880 are separated by 23 nucleotides
PFLU_RS16860: PFLU_RS16860 - RidA family protein, at 3,825,214 to 3,825,684
_RS16860
PFLU_RS16865: PFLU_RS16865 - hypothetical protein, at 3,825,681 to 3,825,899
_RS16865
PFLU_RS16870: PFLU_RS16870 - SMP-30/gluconolactonase/LRE family protein, at 3,825,997 to 3,827,094
_RS16870
PFLU_RS16875: PFLU_RS16875 - nuclear transport factor 2 family protein, at 3,827,313 to 3,827,741
_RS16875
PFLU_RS16880: PFLU_RS16880 - PLP-dependent aminotransferase family protein, at 3,827,765 to 3,829,090
_RS16880
Group
Condition
PFLU
_RS16860
PFLU
_RS16865
PFLU
_RS16870
PFLU
_RS16875
PFLU
_RS16880
carbon source
D-Glucose (C); with MOPS
-0.2
-0.4
+0.0
-0.1
-0.3
carbon source
L-Arabinose (C)
-0.3
-0.3
-0.1
-0.0
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.2
-0.3
-0.1
-0.3
carbon source
D-Glucose (C)
-0.0
-0.3
-0.0
-0.3
-0.1
carbon source
D-Xylose (C)
+0.0
-0.3
-0.0
-0.1
-0.2
carbon source
succinate (C)
+0.1
-0.0
+0.1
-0.4
-0.3
carbon source
NAG (C); with MOPS
-0.1
+0.0
+0.0
-0.5
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.0
+0.1
-0.0
-0.2
-0.3
carbon source
succinate (C)
+0.0
-0.3
-0.2
+0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.3
+0.3
-0.1
-0.2
-0.1
carbon source
D-Glucose (C); with MOPS
+0.0
+0.1
-0.2
-0.0
-0.3
carbon source
D-Glucose (C)
+0.2
-0.1
-0.2
-0.2
-0.0
carbon source
acetate (C)
+0.2
-0.3
-0.2
+0.0
+0.0
carbon source
NAG (C)
-0.0
-0.3
-0.1
+0.2
+0.1
carbon source
acetate (C)
-0.2
-0.2
+0.1
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
-0.2
-0.2
+0.0
+0.0
+0.3
carbon source
L-Arabinose (C)
-0.1
+0.6
-0.3
-0.4
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.4
-0.1
-0.5
+0.4
carbon source
L-Arabinose (C)
+0.1
-0.2
-0.1
+0.1
+0.1
carbon source
Trisodium citrate (C)
-0.4
+0.2
+0.2
-0.3
+0.3
carbon source
succinate (C); with MOPS
-0.1
+0.4
+0.1
-0.3
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.0
+0.2
-0.4
+0.2
carbon source
acetate (C)
-0.0
+0.1
+0.3
-0.2
+0.0
carbon source
Trisodium citrate (C)
+0.0
+0.1
-0.3
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.1
+0.5
+0.1
-0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.5
-0.2
-0.0
-0.0
carbon source
acetate (C)
-0.0
+0.3
+0.4
-0.4
-0.0
carbon source
succinate (C)
-0.2
+0.6
-0.0
-0.2
+0.1
carbon source
D,L-Lactate (C)
+0.1
+0.1
+0.3
-0.1
+0.1
carbon source
acetate (C)
-0.1
+0.5
+0.2
+0.0
+0.0
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