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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS16795 and PFLU_RS16800 are separated by 38 nucleotides
PFLU_RS16800 and PFLU_RS16805 overlap by 49 nucleotides
PFLU_RS16805 and PFLU_RS16810 are separated by 148 nucleotides
PFLU_RS16810 and PFLU_RS16815 are separated by 0 nucleotides
PFLU_RS16795: PFLU_RS16795 - alpha/beta hydrolase, at 3,810,142 to 3,811,164
_RS16795
PFLU_RS16800: PFLU_RS16800 - MFS transporter, at 3,811,203 to 3,812,363
_RS16800
PFLU_RS16805: PFLU_RS16805 - SDR family oxidoreductase, at 3,812,315 to 3,812,590
_RS16805
PFLU_RS16810: PFLU_RS16810 - EAL domain-containing protein, at 3,812,739 to 3,815,312
_RS16810
PFLU_RS16815: PFLU_RS16815 - helix-turn-helix transcriptional regulator, at 3,815,313 to 3,816,134
_RS16815
Group
Condition
PFLU
_RS16795
PFLU
_RS16800
PFLU
_RS16805
PFLU
_RS16810
PFLU
_RS16815
carbon source
acetate (C)
-0.2
-0.6
-1.7
+0.3
-1.1
carbon source
D-Glucose (C)
-0.1
-0.0
-0.5
+0.0
-0.9
carbon source
acetate (C)
-0.3
+0.5
-0.4
-0.2
-0.6
carbon source
L-Arabinose (C)
-0.4
+0.1
+0.5
-0.2
-0.7
carbon source
Trisodium citrate (C)
-0.3
-0.2
+0.2
+0.1
-0.4
carbon source
L-Arabinose (C); with MOPS
-0.6
-0.1
+0.1
+0.1
-0.0
carbon source
acetate (C)
-0.4
-0.5
+0.1
+0.0
+0.3
carbon source
acetate (C)
-0.1
-0.1
-0.0
+0.0
-0.3
carbon source
D-Xylose (C)
-0.2
-0.2
-0.1
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
-0.1
-0.2
-0.2
carbon source
D-Glucose (C)
+0.1
+0.1
-0.1
+0.1
-0.5
carbon source
L-Arabinose (C)
-0.1
-0.3
+0.5
+0.1
-0.3
carbon source
Trisodium citrate (C)
-0.2
+0.2
+0.1
-0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.4
+0.3
+0.5
+0.0
-0.5
carbon source
succinate (C); with MOPS
-0.1
+0.2
+0.2
+0.0
-0.2
carbon source
NAG (C); with MOPS
-0.3
+0.0
+0.4
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.3
-0.2
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.3
+0.1
+0.2
-0.3
carbon source
NAG (C)
+0.1
+0.2
-0.1
-0.1
+0.1
carbon source
succinate (C); with MOPS
-0.2
-0.0
+0.1
+0.2
+0.2
carbon source
L-Arabinose (C)
-0.1
+0.0
+0.2
+0.2
-0.1
carbon source
succinate (C)
-0.4
+0.3
+0.0
+0.0
+0.3
carbon source
D-Glucose (C); with MOPS
-0.1
+0.4
-0.5
+0.2
+0.3
carbon source
D-Glucose (C); with MOPS
-0.1
-0.1
+0.1
+0.2
+0.4
carbon source
D,L-Lactate (C)
+0.1
-0.1
+0.1
-0.0
+0.4
carbon source
D,L-Lactate (C)
+0.1
-0.1
+0.2
+0.1
+0.2
carbon source
succinate (C)
-0.2
-0.1
+0.4
-0.0
+0.4
carbon source
D-Glucose (C)
+0.1
+0.2
+0.3
+0.2
+0.1
carbon source
Trisodium citrate (C)
-0.1
+0.3
+0.3
+0.2
+0.3
carbon source
succinate (C); with MOPS
+0.3
+0.2
+0.4
+0.1
+0.1
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