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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS16710 and PFLU_RS16715 overlap by 1 nucleotides
PFLU_RS16715 and PFLU_RS16720 are separated by 586 nucleotides
PFLU_RS16720 and PFLU_RS16725 are separated by 150 nucleotides
PFLU_RS16725 and PFLU_RS16730 are separated by 1216 nucleotides
PFLU_RS16710: PFLU_RS16710 - nitrite reductase small subunit NirD, at 3,786,578 to 3,786,940
_RS16710
PFLU_RS16715: PFLU_RS16715 - nitrite reductase large subunit, at 3,786,940 to 3,789,480
_RS16715
PFLU_RS16720: PFLU_RS16720 - bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha, at 3,790,067 to 3,794,050
_RS16720
PFLU_RS16725: PFLU_RS16725 - methyl-accepting chemotaxis protein, at 3,794,201 to 3,796,138
_RS16725
PFLU_RS16730: PFLU_RS16730 - nucleotidyltransferase domain-containing protein, at 3,797,355 to 3,798,131
_RS16730
Group
Condition
PFLU
_RS16710
PFLU
_RS16715
PFLU
_RS16720
PFLU
_RS16725
PFLU
_RS16730
carbon source
L-Arabinose (C); with MOPS
-0.8
-0.0
-0.0
+0.1
-0.6
carbon source
D-Glucose (C); with MOPS
-0.4
+0.0
-0.2
-0.2
-0.1
carbon source
L-Arabinose (C)
-0.3
-0.6
+0.1
-0.1
+0.0
carbon source
Trisodium citrate (C); with MOPS
-0.6
-0.1
-0.1
+0.1
-0.2
carbon source
NAG (C); with MOPS
-0.6
+0.2
-0.0
+0.0
-0.4
carbon source
acetate (C)
-0.2
-0.1
-0.4
-0.0
+0.0
carbon source
Trisodium citrate (C)
-0.5
+0.2
+0.1
-0.0
-0.3
carbon source
acetate (C)
+0.2
-0.0
-0.0
-0.4
-0.3
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.0
-0.2
-0.2
-0.1
carbon source
D-Glucose (C)
-0.5
+0.0
+0.1
+0.2
+0.0
carbon source
NAG (C); with MOPS
+0.2
+0.0
+0.2
-0.1
-0.5
carbon source
D-Glucose (C)
+0.5
-0.2
-0.1
+0.1
-0.4
carbon source
Trisodium citrate (C)
+0.2
+0.2
-0.2
-0.1
-0.3
carbon source
succinate (C)
+0.4
-0.0
-0.2
-0.2
-0.1
carbon source
NAG (C)
+0.5
+0.1
-0.1
-0.1
-0.3
carbon source
Trisodium citrate (C)
+0.4
+0.1
-0.2
+0.0
-0.2
carbon source
D,L-Lactate (C)
+0.4
+0.1
+0.0
-0.2
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.1
+0.2
-0.2
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.5
-0.0
+0.0
-0.2
-0.0
carbon source
acetate (C)
+0.1
+0.1
+0.1
+0.2
-0.2
carbon source
L-Arabinose (C)
+0.7
+0.2
-0.1
-0.1
-0.3
carbon source
D-Glucose (C); with MOPS
+0.8
+0.2
-0.0
-0.2
-0.3
carbon source
succinate (C); with MOPS
+0.8
-0.1
-0.1
+0.1
-0.2
carbon source
succinate (C); with MOPS
+0.6
+0.1
-0.1
-0.2
+0.0
carbon source
D,L-Lactate (C)
+0.6
+0.1
+0.1
-0.1
-0.1
carbon source
L-Arabinose (C)
+1.0
-0.0
+0.1
-0.1
-0.3
carbon source
succinate (C)
+0.6
+0.2
-0.0
-0.1
-0.1
carbon source
D-Xylose (C)
+0.7
-0.1
+0.1
+0.1
+0.0
carbon source
NAG (C); with MOPS
+0.6
-0.0
-0.2
+0.1
+0.2
carbon source
acetate (C)
+0.7
+0.1
+0.0
-0.1
+0.0
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