Private Fitness
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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS15300 and PFLU_RS15305 overlap by 4 nucleotides
PFLU_RS15305 and PFLU_RS15310 are separated by 185 nucleotides
PFLU_RS15310 and PFLU_RS15315 are separated by 128 nucleotides
PFLU_RS15315 and PFLU_RS15320 are separated by 36 nucleotides
PFLU_RS15300: PFLU_RS15300 - ATP-dependent DNA helicase, at 3,427,263 to 3,429,518
_RS15300
PFLU_RS15305: PFLU_RS15305 - VRR-NUC domain-containing protein, at 3,429,515 to 3,431,161
_RS15305
PFLU_RS15310: PFLU_RS15310 - YgdI/YgdR family lipoprotein, at 3,431,347 to 3,431,571
_RS15310
PFLU_RS15315: PFLU_RS15315 - lipase, at 3,431,700 to 3,433,109
_RS15315
PFLU_RS15320: PFLU_RS15320 - TolC family outer membrane protein, at 3,433,146 to 3,434,474
_RS15320
Group
Condition
PFLU
_RS15300
PFLU
_RS15305
PFLU
_RS15310
PFLU
_RS15315
PFLU
_RS15320
carbon source
NAG (C); with MOPS
+0.0
-0.1
-0.5
+0.2
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.0
-0.1
+0.1
-0.2
+0.1
carbon source
NAG (C)
+0.0
+0.1
+0.1
-0.3
-0.0
carbon source
D-Xylose (C)
+0.0
+0.1
-0.2
-0.0
+0.1
carbon source
D-Xylose (C)
+0.1
-0.0
-0.2
+0.2
+0.0
carbon source
acetate (C)
+0.2
+0.0
-0.3
+0.1
-0.0
carbon source
succinate (C)
+0.1
+0.0
-0.1
-0.1
+0.1
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.1
-0.3
+0.2
carbon source
succinate (C); with MOPS
+0.2
+0.2
-0.2
-0.1
+0.1
carbon source
D-Glucose (C)
+0.2
+0.0
-0.2
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.1
+0.2
+0.4
-0.2
carbon source
acetate (C)
+0.1
-0.0
-0.4
+0.4
+0.1
carbon source
acetate (C)
+0.1
+0.1
-0.8
+0.5
+0.2
carbon source
L-Arabinose (C)
-0.1
+0.0
-0.3
+0.3
+0.2
carbon source
D-Glucose (C)
+0.1
+0.1
-0.2
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
+0.3
-0.0
+0.0
-0.2
+0.1
carbon source
succinate (C)
+0.1
-0.1
+0.1
-0.0
+0.0
carbon source
succinate (C); with MOPS
+0.0
-0.1
+0.3
-0.0
+0.0
carbon source
D,L-Lactate (C)
-0.1
+0.0
+0.3
-0.0
-0.0
carbon source
D-Glucose (C)
+0.1
+0.1
+0.2
-0.1
-0.0
carbon source
acetate (C)
+0.2
-0.1
-0.2
+0.2
+0.3
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
-0.2
+0.3
+0.0
carbon source
L-Arabinose (C)
+0.1
-0.1
+0.2
+0.2
+0.0
carbon source
succinate (C); with MOPS
+0.0
+0.1
-0.0
+0.3
+0.0
carbon source
succinate (C)
-0.0
+0.0
+0.2
+0.3
-0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
+0.0
+0.3
+0.0
carbon source
Trisodium citrate (C)
+0.2
+0.0
-0.1
+0.4
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.1
-0.1
+0.3
+0.1
carbon source
Trisodium citrate (C)
+0.0
+0.1
-0.2
+0.5
+0.1
carbon source
NAG (C); with MOPS
+0.1
-0.0
+0.0
+0.5
-0.0
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