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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS15230 and PFLU_RS15235 overlap by 14 nucleotides
PFLU_RS15235 and PFLU_RS15240 overlap by 4 nucleotides
PFLU_RS15240 and PFLU_RS15245 are separated by 12 nucleotides
PFLU_RS15245 and PFLU_RS15250 overlap by 4 nucleotides
PFLU_RS15230: PFLU_RS15230 - iron-containing redox enzyme family protein, at 3,413,557 to 3,414,231
_RS15230
PFLU_RS15235: PFLU_RS15235 - SDR family oxidoreductase, at 3,414,218 to 3,415,027
_RS15235
PFLU_RS15240: PFLU_RS15240 - tetratricopeptide repeat protein, at 3,415,024 to 3,415,668
_RS15240
PFLU_RS15245: PFLU_RS15245 - response regulator, at 3,415,681 to 3,416,343
_RS15245
PFLU_RS15250: PFLU_RS15250 - HAMP domain-containing protein, at 3,416,340 to 3,417,707
_RS15250
Group
Condition
PFLU
_RS15230
PFLU
_RS15235
PFLU
_RS15240
PFLU
_RS15245
PFLU
_RS15250
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.4
+0.2
-0.6
-0.8
carbon source
acetate (C)
-0.3
-0.1
-1.0
-0.1
+0.6
carbon source
D-Glucose (C)
-0.5
-0.2
-0.1
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.2
-0.0
-0.5
+0.0
carbon source
succinate (C)
+0.1
-0.3
+0.1
-0.5
-0.1
carbon source
L-Arabinose (C)
+0.1
-0.0
-0.3
-0.2
-0.3
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.2
-0.5
-0.2
+0.2
carbon source
D-Glucose (C)
-0.3
-0.1
+0.0
-0.4
+0.2
carbon source
succinate (C); with MOPS
-0.3
-0.1
+0.1
+0.0
-0.2
carbon source
Trisodium citrate (C)
+0.1
-0.2
+0.2
-0.2
-0.3
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
+0.1
-0.3
-0.1
carbon source
NAG (C)
+0.1
-0.2
-0.0
+0.2
-0.3
carbon source
succinate (C)
-0.2
-0.3
+0.1
+0.4
-0.2
carbon source
succinate (C); with MOPS
-0.2
-0.0
+0.1
+0.2
-0.2
carbon source
succinate (C)
+0.1
-0.1
-0.0
+0.1
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.0
+0.1
-0.2
-0.2
carbon source
NAG (C); with MOPS
-0.2
+0.2
+0.2
-0.4
+0.2
carbon source
NAG (C); with MOPS
+0.0
-0.1
+0.5
-0.7
+0.2
carbon source
D-Glucose (C); with MOPS
-0.1
-0.1
+0.1
+0.3
-0.2
carbon source
D-Xylose (C)
+0.0
-0.0
+0.1
+0.2
-0.2
carbon source
L-Arabinose (C)
+0.2
-0.1
+0.2
-0.3
+0.1
carbon source
acetate (C)
+0.0
+0.1
+0.0
-0.2
+0.2
carbon source
NAG (C)
+0.2
-0.1
-0.3
+0.2
+0.2
carbon source
L-Arabinose (C)
-0.4
+0.2
+0.2
-0.4
+0.6
carbon source
succinate (C); with MOPS
+0.1
+0.1
+0.0
-0.3
+0.4
carbon source
acetate (C)
-0.1
-0.3
+0.2
+0.4
+0.0
carbon source
D,L-Lactate (C)
+0.0
-0.1
+0.0
+0.2
+0.3
carbon source
acetate (C)
+0.2
+0.1
+0.2
+0.1
+0.3
carbon source
Trisodium citrate (C)
-0.2
+0.2
+0.3
+0.3
+0.4
carbon source
acetate (C)
-0.2
+0.2
+0.2
+0.6
+0.3
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