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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS14445 and PFLU_RS14450 overlap by 4 nucleotides
PFLU_RS14450 and PFLU_RS14455 are separated by 174 nucleotides
PFLU_RS14455 and PFLU_RS14460 are separated by 143 nucleotides
PFLU_RS14460 and PFLU_RS14465 are separated by 69 nucleotides
PFLU_RS14445: PFLU_RS14445 - AzlC family ABC transporter permease, at 3,235,939 to 3,236,634
_RS14445
PFLU_RS14450: PFLU_RS14450 - AzlD domain-containing protein, at 3,236,631 to 3,236,942
_RS14450
PFLU_RS14455: PFLU_RS14455 - hypothetical protein, at 3,237,117 to 3,237,470
_RS14455
PFLU_RS14460: PFLU_RS14460 - DUF1275 domain-containing protein, at 3,237,614 to 3,238,318
_RS14460
PFLU_RS14465: PFLU_RS14465 - ABC-F family ATP-binding cassette domain-containing protein, at 3,238,388 to 3,240,010
_RS14465
Group
Condition
PFLU
_RS14445
PFLU
_RS14450
PFLU
_RS14455
PFLU
_RS14460
PFLU
_RS14465
carbon source
L-Arabinose (C)
-0.5
+0.1
-0.2
-0.9
-0.0
carbon source
NAG (C); with MOPS
-0.4
-0.2
+0.2
-0.8
+0.1
carbon source
acetate (C)
+0.0
-0.7
+0.1
-0.3
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.2
-0.4
+0.3
-0.5
-0.2
carbon source
NAG (C); with MOPS
-0.5
+0.0
+0.1
-0.3
+0.2
carbon source
succinate (C)
-0.2
+0.0
+0.3
-0.2
-0.2
carbon source
L-Arabinose (C)
-0.2
+0.5
+0.2
-0.9
-0.0
carbon source
acetate (C)
+0.0
-0.4
+0.2
-0.1
+0.0
carbon source
L-Arabinose (C)
-0.7
+0.5
-0.0
-0.2
+0.2
carbon source
D-Glucose (C); with MOPS
-0.2
-0.2
+0.0
+0.1
+0.1
carbon source
succinate (C); with MOPS
-0.3
-0.1
+0.1
-0.1
+0.2
carbon source
NAG (C)
-0.3
-0.2
+0.1
+0.3
-0.0
carbon source
acetate (C)
+0.1
-0.4
-0.0
+0.2
+0.0
carbon source
succinate (C); with MOPS
-0.1
+0.3
-0.0
-0.3
-0.1
carbon source
succinate (C); with MOPS
+0.3
-0.4
+0.1
-0.3
+0.2
carbon source
D-Glucose (C)
+0.2
-0.0
-0.2
+0.1
-0.1
carbon source
succinate (C)
-0.1
+0.4
-0.1
-0.4
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.3
+0.5
+0.1
-0.2
-0.1
carbon source
D-Glucose (C)
-0.0
+0.4
+0.1
-0.2
-0.2
carbon source
NAG (C)
+0.2
-0.2
+0.0
+0.2
+0.0
carbon source
Trisodium citrate (C)
+0.1
+0.2
+0.2
-0.2
-0.1
carbon source
D-Glucose (C); with MOPS
+0.0
+0.5
-0.2
-0.2
+0.2
carbon source
acetate (C)
-0.2
+0.5
-0.1
-0.2
+0.4
carbon source
L-Arabinose (C); with MOPS
-0.4
+0.6
+0.4
-0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.7
+0.2
-0.1
-0.0
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.3
+0.1
-0.0
carbon source
succinate (C)
+0.3
+0.3
-0.1
+0.1
+0.0
carbon source
D-Glucose (C)
+0.2
+0.1
+0.1
+0.1
+0.1
carbon source
acetate (C)
+0.1
+0.8
-0.2
+0.0
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.4
+0.1
-0.1
+0.3
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