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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS13980 and PFLU_RS13985 overlap by 1 nucleotides
PFLU_RS13985 and PFLU_RS13990 overlap by 17 nucleotides
PFLU_RS13990 and PFLU_RS13995 are separated by 8 nucleotides
PFLU_RS13995 and PFLU_RS14000 are separated by 70 nucleotides
PFLU_RS13980: PFLU_RS13980 - terminase, at 3,136,980 to 3,138,470
_RS13980
PFLU_RS13985: PFLU_RS13985 - DUF4055 domain-containing protein, at 3,138,470 to 3,139,930
_RS13985
PFLU_RS13990: PFLU_RS13990 - head morphogenesis protein, at 3,139,914 to 3,140,960
_RS13990
PFLU_RS13995: PFLU_RS13995 - hypothetical protein, at 3,140,969 to 3,141,457
_RS13995
PFLU_RS14000: PFLU_RS14000 - hypothetical protein, at 3,141,528 to 3,141,746
_RS14000
Group
Condition
PFLU
_RS13980
PFLU
_RS13985
PFLU
_RS13990
PFLU
_RS13995
PFLU
_RS14000
carbon source
L-Arabinose (C)
-0.0
+0.2
+0.1
+0.1
-1.5
carbon source
Trisodium citrate (C)
+0.0
-0.2
-0.2
-0.2
-0.4
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.1
-0.3
+0.4
-0.7
carbon source
acetate (C)
+0.4
-0.4
+0.3
-0.2
-0.7
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.2
-0.2
-0.4
-0.4
carbon source
Trisodium citrate (C)
-0.2
+0.3
+0.0
-0.2
-0.5
carbon source
Trisodium citrate (C)
-0.0
-0.0
-0.2
-0.3
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
-0.3
+0.0
-0.4
carbon source
L-Arabinose (C)
-0.0
+0.0
+0.1
-0.3
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.3
-0.2
-0.2
-0.2
carbon source
acetate (C)
-0.1
+0.1
+0.2
+0.3
-0.7
carbon source
succinate (C)
+0.0
+0.2
-0.2
+0.2
-0.4
carbon source
D-Glucose (C); with MOPS
+0.0
+0.1
-0.0
+0.2
-0.3
carbon source
D,L-Lactate (C)
-0.1
+0.1
-0.1
-0.1
+0.3
carbon source
acetate (C)
+0.2
-0.0
-0.3
+0.4
+0.0
carbon source
succinate (C); with MOPS
-0.1
+0.2
-0.1
+0.1
+0.1
carbon source
D-Glucose (C)
-0.0
+0.1
-0.0
-0.2
+0.5
carbon source
NAG (C); with MOPS
+0.2
+0.1
-0.1
-0.2
+0.3
carbon source
NAG (C)
-0.2
+0.0
+0.1
-0.1
+0.6
carbon source
succinate (C); with MOPS
-0.1
+0.1
-0.1
+0.1
+0.3
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.2
-0.1
-0.0
+0.6
carbon source
succinate (C); with MOPS
-0.0
+0.1
-0.1
+0.1
+0.5
carbon source
succinate (C)
-0.0
+0.3
-0.1
+0.2
+0.2
carbon source
D-Glucose (C)
-0.1
+0.1
-0.1
+0.1
+0.6
carbon source
D,L-Lactate (C)
+0.0
+0.0
+0.1
+0.2
+0.3
carbon source
acetate (C)
-0.2
+0.3
-0.1
+0.6
+0.1
carbon source
D-Glucose (C)
+0.0
+0.2
-0.1
+0.1
+0.4
carbon source
NAG (C)
+0.1
+0.1
+0.2
-0.1
+0.5
carbon source
NAG (C); with MOPS
+0.1
+0.2
+0.1
+0.3
+0.4
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.4
+0.4
-0.2
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