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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS12880 and PFLU_RS12885 are separated by 1 nucleotides
PFLU_RS12885 and PFLU_RS12890 are separated by 1 nucleotides
PFLU_RS12890 and PFLU_RS12895 are separated by 0 nucleotides
PFLU_RS12895 and PFLU_RS12900 overlap by 4 nucleotides
PFLU_RS12880: PFLU_RS12880 - ABC transporter ATP-binding protein, at 2,906,847 to 2,908,460
_RS12880
PFLU_RS12885: PFLU_RS12885 - ABC transporter permease, at 2,908,462 to 2,909,481
_RS12885
PFLU_RS12890: PFLU_RS12890 - microcin C ABC transporter permease YejB, at 2,909,483 to 2,910,559
_RS12890
PFLU_RS12895: PFLU_RS12895 - ABC transporter substrate-binding protein, at 2,910,560 to 2,912,398
_RS12895
PFLU_RS12900: PFLU_RS12900 - ABC transporter substrate-binding protein, at 2,912,395 to 2,914,224
_RS12900
Group
Condition
PFLU
_RS12880
PFLU
_RS12885
PFLU
_RS12890
PFLU
_RS12895
PFLU
_RS12900
carbon source
NAG (C)
+0.2
-0.3
-0.2
-0.2
+0.1
carbon source
L-Arabinose (C)
+0.0
-0.2
-0.1
+0.3
+0.1
carbon source
acetate (C)
-0.4
-0.2
+0.2
+0.7
+0.1
carbon source
D-Glucose (C)
+0.2
-0.1
-0.0
+0.3
+0.1
carbon source
D-Glucose (C); with MOPS
-0.2
+0.3
-0.0
+0.3
+0.1
carbon source
Trisodium citrate (C)
+0.0
-0.1
+0.3
+0.3
-0.0
carbon source
NAG (C); with MOPS
+0.2
-0.1
+0.1
+0.3
-0.1
carbon source
succinate (C); with MOPS
+0.1
+0.2
-0.0
+0.3
+0.0
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.3
+0.1
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.4
+0.1
-0.2
+0.3
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.2
-0.2
+0.5
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.3
+0.1
+0.1
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.2
+0.2
+0.2
+0.0
carbon source
Trisodium citrate (C)
+0.3
+0.0
+0.2
+0.4
-0.1
carbon source
D-Glucose (C); with MOPS
+0.3
+0.3
-0.0
+0.2
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.0
+0.5
+0.1
+0.2
+0.1
carbon source
succinate (C)
+0.2
+0.1
-0.0
+0.4
+0.2
carbon source
succinate (C); with MOPS
+0.2
+0.3
+0.1
+0.3
-0.1
carbon source
D-Glucose (C)
-0.0
+0.5
+0.0
+0.2
+0.1
carbon source
succinate (C)
+0.3
+0.2
+0.1
+0.3
+0.1
carbon source
acetate (C)
+0.0
+0.4
-0.0
+0.5
+0.1
carbon source
succinate (C); with MOPS
+0.4
+0.4
+0.0
+0.0
-0.0
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.2
+0.5
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.5
+0.3
-0.0
+0.3
+0.0
carbon source
D-Glucose (C); with MOPS
+0.2
+0.2
+0.3
+0.4
+0.0
carbon source
acetate (C)
-0.1
-0.2
+0.4
+0.7
+0.3
carbon source
Trisodium citrate (C)
+0.2
+0.5
+0.1
+0.3
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.2
+0.2
+0.4
+0.1
carbon source
D-Glucose (C)
+0.4
+0.4
+0.3
+0.2
-0.1
carbon source
NAG (C); with MOPS
+0.2
+0.5
+0.2
+0.3
+0.1
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