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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS12835 and PFLU_RS12840 are separated by 161 nucleotides
PFLU_RS12840 and PFLU_RS12845 are separated by 7 nucleotides
PFLU_RS12845 and PFLU_RS12850 are separated by 295 nucleotides
PFLU_RS12850 and PFLU_RS12855 are separated by 59 nucleotides
PFLU_RS12835: PFLU_RS12835 - acetoacetate--CoA ligase, at 2,894,520 to 2,896,478
_RS12835
PFLU_RS12840: PFLU_RS12840 - 3-hydroxybutyrate dehydrogenase, at 2,896,640 to 2,897,413
_RS12840
PFLU_RS12845: PFLU_RS12845 - GntP family permease, at 2,897,421 to 2,898,812
_RS12845
PFLU_RS12850: PFLU_RS12850 - sigma-54-dependent Fis family transcriptional regulator, at 2,899,108 to 2,900,508
_RS12850
PFLU_RS12855: PFLU_RS12855 - ABC transporter ATP-binding protein, at 2,900,568 to 2,902,139
_RS12855
Group
Condition
PFLU
_RS12835
PFLU
_RS12840
PFLU
_RS12845
PFLU
_RS12850
PFLU
_RS12855
carbon source
D-Xylose (C)
+0.0
-0.5
+0.0
-0.5
-0.2
carbon source
L-Arabinose (C)
-0.3
+1.0
-0.1
-1.0
-0.3
carbon source
NAG (C)
+0.1
-0.4
+0.1
+0.2
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.1
+0.3
-0.5
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.5
-0.2
-0.5
+0.2
carbon source
succinate (C); with MOPS
+0.2
+0.8
-0.1
-0.6
-0.2
carbon source
NAG (C); with MOPS
+0.2
+0.1
+0.4
-0.7
+0.1
carbon source
acetate (C)
-0.0
+0.4
-0.5
-0.4
+0.5
carbon source
succinate (C); with MOPS
-0.1
+0.6
+0.3
-0.3
-0.3
carbon source
Trisodium citrate (C)
+0.2
-0.0
+0.1
-0.5
+0.5
carbon source
D-Glucose (C); with MOPS
-0.1
+0.7
+0.0
-0.4
+0.3
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.6
-0.2
-0.2
+0.4
carbon source
D-Glucose (C)
+0.0
+0.3
+0.3
-0.1
+0.0
carbon source
D-Glucose (C); with MOPS
+0.0
+0.2
-0.1
-0.1
+0.6
carbon source
NAG (C); with MOPS
+0.2
+0.4
+0.3
-0.6
+0.2
carbon source
Trisodium citrate (C)
+0.0
+0.8
+0.3
-0.6
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.7
+0.3
-0.7
+0.3
carbon source
L-Arabinose (C)
-0.1
+0.8
+0.2
-0.5
+0.4
carbon source
succinate (C); with MOPS
+0.1
+1.0
+0.2
-0.4
+0.1
carbon source
D-Glucose (C); with MOPS
+0.2
+0.4
+0.3
-0.0
+0.2
carbon source
D-Glucose (C)
+0.1
+0.8
+0.4
-0.5
+0.3
carbon source
acetate (C)
-0.1
+0.6
+0.6
-0.2
+0.3
carbon source
NAG (C); with MOPS
+0.3
+0.5
-0.0
-0.1
+0.5
carbon source
L-Arabinose (C)
-0.1
+0.9
+0.1
+0.2
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.2
+1.2
-0.2
-0.1
+0.1
carbon source
succinate (C)
+0.2
+0.7
+0.3
-0.2
+0.5
carbon source
succinate (C)
-0.2
+1.1
+0.3
-0.1
+0.3
carbon source
acetate (C)
-0.3
+0.3
+0.4
+0.3
+1.0
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.7
+0.4
-0.1
+0.4
carbon source
D-Glucose (C)
+0.2
+0.6
+0.3
-0.1
+0.6
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