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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS12530 and PFLU_RS12535 are separated by 209 nucleotides
PFLU_RS12535 and PFLU_RS12540 overlap by 4 nucleotides
PFLU_RS12540 and PFLU_RS30755 are separated by 437 nucleotides
PFLU_RS30755 and PFLU_RS12545 are separated by 126 nucleotides
PFLU_RS12530: PFLU_RS12530 - helix-turn-helix domain-containing protein, at 2,827,972 to 2,828,859
_RS12530
PFLU_RS12535: PFLU_RS12535 - polyamine ABC transporter substrate-binding protein, at 2,829,069 to 2,830,157
_RS12535
PFLU_RS12540: PFLU_RS12540 - FAD-binding oxidoreductase, at 2,830,154 to 2,831,449
_RS12540
PFLU_RS30755: PFLU_RS30755 - hypothetical protein, at 2,831,887 to 2,833,143
_RS30755
PFLU_RS12545: PFLU_RS12545 - LysR family transcriptional regulator, at 2,833,270 to 2,834,163
_RS12545
Group
Condition
PFLU
_RS12530
PFLU
_RS12535
PFLU
_RS12540
PFLU
_RS30755
PFLU
_RS12545
carbon source
L-Arabinose (C); with MOPS
+0.3
-0.3
-0.2
-0.1
+0.0
carbon source
succinate (C); with MOPS
-0.4
+0.0
+0.2
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.2
-0.0
-0.2
+0.0
carbon source
D-Xylose (C)
+0.0
-0.1
-0.2
+0.2
+0.1
carbon source
D-Glucose (C)
+0.3
-0.3
+0.1
+0.2
+0.1
carbon source
L-Arabinose (C)
+0.4
+0.3
-0.2
-0.2
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.2
+0.3
+0.1
-0.1
carbon source
L-Arabinose (C)
+0.4
-0.3
+0.2
-0.2
+0.4
carbon source
D-Glucose (C)
+0.1
+0.1
-0.1
+0.1
+0.2
carbon source
D,L-Lactate (C)
+0.1
+0.2
-0.1
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.4
+0.0
+0.1
+0.0
-0.1
carbon source
D-Glucose (C)
+0.2
-0.1
+0.0
+0.0
+0.3
carbon source
NAG (C)
-0.0
+0.1
+0.0
+0.1
+0.3
carbon source
D-Xylose (C)
+0.2
+0.2
-0.0
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.0
+0.2
-0.1
+0.1
carbon source
succinate (C)
+0.2
-0.0
+0.1
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.2
+0.2
+0.1
-0.0
+0.0
carbon source
succinate (C)
-0.0
+0.1
+0.3
-0.0
+0.2
carbon source
L-Arabinose (C)
+0.5
+0.3
+0.1
-0.0
-0.3
carbon source
NAG (C)
+0.1
+0.1
-0.0
+0.1
+0.3
carbon source
D,L-Lactate (C)
+0.3
+0.0
+0.0
+0.0
+0.2
carbon source
acetate (C)
+0.1
+0.2
+0.2
+0.0
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.3
+0.2
+0.0
+0.4
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.4
-0.1
+0.1
+0.1
carbon source
succinate (C); with MOPS
+0.3
+0.3
-0.1
-0.1
+0.3
carbon source
acetate (C)
+0.1
+0.2
+0.1
+0.1
+0.3
carbon source
NAG (C); with MOPS
+0.3
+0.1
+0.0
+0.0
+0.5
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.3
+0.1
+0.5
carbon source
NAG (C); with MOPS
+0.1
+0.3
+0.3
+0.2
+0.4
carbon source
acetate (C)
+0.6
-0.0
+0.3
+0.1
+0.6
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