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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS12400 and PFLU_RS12405 are separated by 3 nucleotides
PFLU_RS12405 and PFLU_RS12410 are separated by 55 nucleotides
PFLU_RS12410 and PFLU_RS12415 overlap by 17 nucleotides
PFLU_RS12415 and PFLU_RS12420 are separated by 140 nucleotides
PFLU_RS12400: PFLU_RS12400 - aliphatic amidase, at 2,749,295 to 2,750,338
_RS12400
PFLU_RS12405: PFLU_RS12405 - ATP-dependent Clp protease ATP-binding subunit, at 2,750,342 to 2,751,307
_RS12405
PFLU_RS12410: PFLU_RS12410 - MATE family efflux transporter, at 2,751,363 to 2,752,718
_RS12410
PFLU_RS12415: PFLU_RS12415 - TetR/AcrR family transcriptional regulator, at 2,752,702 to 2,753,289
_RS12415
PFLU_RS12420: PFLU_RS12420 - MFS transporter, at 2,753,430 to 2,754,602
_RS12420
Group
Condition
PFLU
_RS12400
PFLU
_RS12405
PFLU
_RS12410
PFLU
_RS12415
PFLU
_RS12420
carbon source
D,L-Lactate (C)
-0.1
-0.4
+0.1
-0.0
-0.1
carbon source
D-Glucose (C); with MOPS
-0.1
-0.1
-0.1
-0.2
+0.1
carbon source
NAG (C)
-0.0
-0.2
+0.1
-0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.5
+0.0
+0.1
+0.0
carbon source
acetate (C)
-0.3
-0.3
+0.5
+0.1
-0.3
carbon source
L-Arabinose (C)
-0.1
-0.1
+0.1
-0.3
+0.2
carbon source
D-Glucose (C)
-0.1
-0.2
+0.1
-0.1
+0.1
carbon source
NAG (C); with MOPS
-0.2
+0.1
+0.0
+0.1
-0.3
carbon source
succinate (C)
-0.1
-0.2
+0.1
+0.1
-0.1
carbon source
acetate (C)
+0.1
+0.1
-0.0
-0.3
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.1
+0.2
-0.2
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.2
+0.1
+0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.1
-0.2
-0.0
+0.2
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.4
+0.3
+0.1
+0.0
carbon source
acetate (C)
-0.3
-0.5
+0.4
+0.3
+0.1
carbon source
Trisodium citrate (C)
-0.1
-0.3
+0.2
+0.3
-0.0
carbon source
D-Xylose (C)
+0.0
-0.2
+0.1
+0.2
-0.1
carbon source
D-Glucose (C)
-0.2
+0.2
+0.1
+0.3
-0.3
carbon source
succinate (C); with MOPS
-0.2
+0.2
+0.0
+0.1
+0.1
carbon source
L-Arabinose (C)
-0.2
+0.1
+0.1
-0.2
+0.5
carbon source
Trisodium citrate (C)
-0.2
-0.0
+0.2
+0.3
+0.1
carbon source
acetate (C)
+0.1
-0.1
+0.2
-0.1
+0.3
carbon source
succinate (C); with MOPS
-0.0
-0.0
+0.1
+0.2
+0.2
carbon source
Trisodium citrate (C)
-0.0
-0.0
+0.1
+0.3
+0.1
carbon source
succinate (C)
-0.1
-0.1
+0.2
+0.3
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.0
+0.2
+0.2
+0.3
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.1
-0.0
+0.6
+0.3
carbon source
D-Glucose (C); with MOPS
-0.1
+0.2
+0.2
+0.3
+0.2
carbon source
L-Arabinose (C)
+0.0
+0.3
+0.1
+0.3
+0.1
carbon source
D-Glucose (C); with MOPS
+0.0
+0.2
+0.3
+0.0
+0.2
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