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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS11725 and PFLU_RS11730 are separated by 161 nucleotides
PFLU_RS11730 and PFLU_RS11735 are separated by 132 nucleotides
PFLU_RS11735 and PFLU_RS11740 are separated by 2 nucleotides
PFLU_RS11740 and PFLU_RS11745 are separated by 1 nucleotides
PFLU_RS11725: PFLU_RS11725 - LacI family transcriptional regulator, at 2,602,335 to 2,603,393
_RS11725
PFLU_RS11730: PFLU_RS11730 - fatty acid desaturase family protein, at 2,603,555 to 2,604,652
_RS11730
PFLU_RS11735: PFLU_RS11735 - Rieske 2Fe-2S domain-containing protein, at 2,604,785 to 2,605,105
_RS11735
PFLU_RS11740: PFLU_RS11740 - NAD(P)-binding protein, at 2,605,108 to 2,606,307
_RS11740
PFLU_RS11745: PFLU_RS11745 - xylose isomerase, at 2,606,309 to 2,607,124
_RS11745
Group
Condition
PFLU
_RS11725
PFLU
_RS11730
PFLU
_RS11735
PFLU
_RS11740
PFLU
_RS11745
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.0
-0.6
-0.5
+0.3
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
-0.9
-0.0
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.1
-0.6
+0.1
+0.2
carbon source
Trisodium citrate (C)
-0.3
-0.0
-0.3
+0.1
+0.0
carbon source
D,L-Lactate (C)
+0.1
-0.0
-0.5
+0.2
-0.1
carbon source
L-Arabinose (C)
-0.5
+0.1
+0.0
-0.1
+0.1
carbon source
succinate (C)
-0.2
+0.2
+0.1
-0.4
+0.1
carbon source
NAG (C)
+0.3
+0.0
-0.3
-0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.1
+0.1
+0.2
+0.0
carbon source
D-Glucose (C); with MOPS
+0.0
-0.0
-0.3
+0.3
+0.2
carbon source
acetate (C)
+0.0
-0.1
-0.3
+0.4
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
-0.1
+0.4
-0.2
+0.1
carbon source
succinate (C); with MOPS
-0.4
+0.1
+0.2
+0.3
-0.0
carbon source
D-Glucose (C)
-0.3
+0.1
-0.2
+0.6
+0.1
carbon source
succinate (C); with MOPS
+0.1
+0.0
-0.2
+0.1
+0.4
carbon source
succinate (C); with MOPS
-0.2
+0.0
+0.2
+0.1
+0.1
carbon source
L-Arabinose (C)
-0.1
-0.1
+0.3
-0.2
+0.6
carbon source
Trisodium citrate (C)
+0.2
+0.3
-0.1
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.0
-0.2
+0.5
+0.0
carbon source
NAG (C); with MOPS
-0.1
+0.0
+0.4
+0.4
-0.2
carbon source
Trisodium citrate (C)
-0.1
+0.0
+0.1
+0.5
-0.0
carbon source
D-Glucose (C)
+0.1
-0.1
+0.3
+0.2
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.0
+0.1
+0.3
+0.1
carbon source
NAG (C); with MOPS
-0.0
+0.1
+0.1
+0.1
+0.5
carbon source
D-Glucose (C)
+0.2
-0.1
+0.0
+0.8
-0.1
carbon source
NAG (C); with MOPS
+0.2
-0.0
+0.4
+0.2
+0.0
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.3
+0.2
-0.0
carbon source
succinate (C)
+0.1
+0.1
+0.1
+0.2
+0.5
carbon source
succinate (C)
-0.0
+0.2
+0.2
+0.6
+0.1
carbon source
acetate (C)
+0.3
+0.2
+0.5
+1.1
+0.3
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