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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS10935 and PFLU_RS30665 are separated by 14 nucleotides
PFLU_RS30665 and PFLU_RS10940 are separated by 287 nucleotides
PFLU_RS10940 and PFLU_RS10945 are separated by 14 nucleotides
PFLU_RS10945 and PFLU_RS10950 overlap by 4 nucleotides
PFLU_RS10935: PFLU_RS10935 - alpha/beta hydrolase, at 2,412,614 to 2,413,489
_RS10935
PFLU_RS30665: PFLU_RS30665 - XRE family transcriptional regulator, at 2,413,504 to 2,413,626
_RS30665
PFLU_RS10940: PFLU_RS10940 - ATP-binding cassette domain-containing protein, at 2,413,914 to 2,416,010
_RS10940
PFLU_RS10945: PFLU_RS10945 - ABC transporter substrate-binding protein, at 2,416,025 to 2,417,074
_RS10945
PFLU_RS10950: PFLU_RS10950 - homocysteine S-methyltransferase family protein, at 2,417,071 to 2,417,991
_RS10950
Group
Condition
PFLU
_RS10935
PFLU
_RS30665
PFLU
_RS10940
PFLU
_RS10945
PFLU
_RS10950
carbon source
NAG (C); with MOPS
+0.4
N.D.
-0.4
+0.0
-1.5
carbon source
L-Arabinose (C); with MOPS
-0.5
N.D.
+0.3
-0.0
-1.0
carbon source
acetate (C)
-0.1
N.D.
-0.1
-0.1
-0.6
carbon source
D-Glucose (C)
+0.0
N.D.
-0.0
-0.1
-0.8
carbon source
acetate (C)
-0.1
N.D.
-0.1
-0.1
-0.4
carbon source
L-Arabinose (C)
+0.1
N.D.
-0.3
-0.1
-0.5
carbon source
D-Glucose (C); with MOPS
-0.1
N.D.
+0.0
+0.0
-0.6
carbon source
L-Arabinose (C)
+0.3
N.D.
+0.2
-0.1
-0.9
carbon source
L-Arabinose (C); with MOPS
+0.1
N.D.
-0.1
-0.1
-0.5
carbon source
Trisodium citrate (C); with MOPS
+0.1
N.D.
-0.1
-0.1
-0.4
carbon source
succinate (C)
-0.1
N.D.
+0.1
-0.1
-0.4
carbon source
Trisodium citrate (C)
+0.0
N.D.
+0.1
-0.1
-0.4
carbon source
Trisodium citrate (C)
-0.1
N.D.
+0.1
-0.1
-0.3
carbon source
D-Glucose (C)
-0.1
N.D.
+0.1
-0.2
-0.1
carbon source
NAG (C)
+0.0
N.D.
+0.1
+0.1
-0.3
carbon source
D-Glucose (C); with MOPS
+0.0
N.D.
+0.1
+0.0
-0.3
carbon source
acetate (C)
+0.6
N.D.
-0.0
+0.2
-0.8
carbon source
succinate (C)
+0.2
N.D.
-0.1
+0.1
-0.2
carbon source
succinate (C)
-0.1
N.D.
-0.2
-0.0
+0.4
carbon source
NAG (C); with MOPS
+0.2
N.D.
+0.0
+0.1
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.2
N.D.
+0.0
-0.2
+0.2
carbon source
succinate (C); with MOPS
+0.2
N.D.
-0.1
-0.0
+0.2
carbon source
acetate (C)
-0.0
N.D.
-0.1
+0.0
+0.4
carbon source
D,L-Lactate (C)
+0.0
N.D.
+0.0
-0.0
+0.3
carbon source
D,L-Lactate (C)
+0.1
N.D.
-0.0
-0.2
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.2
N.D.
+0.1
-0.2
+0.3
carbon source
Trisodium citrate (C); with MOPS
+0.1
N.D.
+0.2
-0.1
+0.3
carbon source
succinate (C); with MOPS
-0.1
N.D.
+0.3
+0.1
+0.2
carbon source
NAG (C); with MOPS
-0.1
N.D.
+0.5
-0.0
+0.6
carbon source
L-Arabinose (C)
+0.1
N.D.
+0.7
-0.1
+0.4
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