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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS10350 and PFLU_RS10355 are separated by 349 nucleotides
PFLU_RS10355 and PFLU_RS10360 are separated by 302 nucleotides
PFLU_RS10360 and PFLU_RS10365 overlap by 1 nucleotides
PFLU_RS10365 and PFLU_RS10370 overlap by 8 nucleotides
PFLU_RS10350: PFLU_RS10350 - MFS transporter, at 2,281,459 to 2,282,610
_RS10350
PFLU_RS10355: PFLU_RS10355 - DeoR family transcriptional regulator, at 2,282,960 to 2,283,946
_RS10355
PFLU_RS10360: PFLU_RS10360 - type VI secretion system tip protein VgrG, at 2,284,249 to 2,286,267
_RS10360
PFLU_RS10365: PFLU_RS10365 - DUF4123 domain-containing protein, at 2,286,267 to 2,287,103
_RS10365
PFLU_RS10370: PFLU_RS10370 - hypothetical protein, at 2,287,096 to 2,287,875
_RS10370
Group
Condition
PFLU
_RS10350
PFLU
_RS10355
PFLU
_RS10360
PFLU
_RS10365
PFLU
_RS10370
carbon source
L-Arabinose (C)
-0.3
-2.7
-0.2
-0.6
+0.3
carbon source
L-Arabinose (C); with MOPS
-0.1
-1.1
+0.0
-0.5
+0.1
carbon source
Trisodium citrate (C)
-0.1
-1.5
+0.0
+0.1
+0.1
carbon source
D-Glucose (C)
-0.3
-0.9
+0.1
-0.3
-0.1
carbon source
acetate (C)
-0.3
-0.9
-0.0
-0.0
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.3
-0.2
-1.1
-0.4
carbon source
D,L-Lactate (C)
-0.3
-0.7
+0.1
-0.3
+0.0
carbon source
NAG (C); with MOPS
-0.1
-0.4
+0.0
-0.6
-0.1
carbon source
acetate (C)
+0.2
-0.3
-0.3
-0.5
-0.2
carbon source
D-Glucose (C)
-0.1
-0.3
+0.2
-0.7
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.6
-0.0
-0.2
+0.2
carbon source
Trisodium citrate (C)
-0.1
-0.6
-0.1
+0.0
+0.1
carbon source
Trisodium citrate (C)
-0.2
-0.2
-0.0
-0.3
+0.1
carbon source
D-Glucose (C); with MOPS
-0.3
-0.2
-0.0
-0.2
+0.0
carbon source
succinate (C); with MOPS
-0.4
-0.2
-0.0
+0.1
-0.2
carbon source
NAG (C)
-0.0
-0.6
-0.0
-0.0
+0.0
carbon source
NAG (C)
-0.1
-0.3
+0.0
-0.2
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.4
+0.1
-0.3
+0.0
carbon source
acetate (C)
-0.2
+0.0
+0.1
-0.3
-0.2
carbon source
L-Arabinose (C)
-0.2
-0.4
+0.1
-0.2
+0.2
carbon source
D-Glucose (C); with MOPS
-0.2
-0.5
-0.0
-0.0
+0.2
carbon source
D-Glucose (C); with MOPS
+0.0
-0.4
+0.2
-0.2
+0.0
carbon source
acetate (C)
-0.3
+0.3
+0.1
-0.5
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.8
+0.2
+0.2
+0.2
carbon source
L-Arabinose (C)
-0.0
-0.1
-0.0
-0.3
+0.3
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.3
+0.2
-0.2
-0.1
carbon source
NAG (C); with MOPS
-0.1
+0.2
+0.0
+0.3
-0.3
carbon source
succinate (C)
-0.3
+0.0
+0.1
+0.3
+0.1
carbon source
succinate (C)
-0.3
+0.1
+0.2
+0.4
-0.0
carbon source
succinate (C)
-0.0
+0.4
-0.1
+0.2
+0.0
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