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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS10090 and PFLU_RS10095 are separated by 100 nucleotides
PFLU_RS10095 and PFLU_RS10100 overlap by 12 nucleotides
PFLU_RS10100 and PFLU_RS10105 are separated by 11 nucleotides
PFLU_RS10105 and PFLU_RS10110 are separated by 37 nucleotides
PFLU_RS10090: PFLU_RS10090 - redox-sensitive transcriptional activator SoxR, at 2,223,854 to 2,224,303
_RS10090
PFLU_RS10095: PFLU_RS10095 - antibiotic biosynthesis monooxygenase, at 2,224,404 to 2,224,769
_RS10095
PFLU_RS10100: PFLU_RS10100 - sigma-54-dependent Fis family transcriptional regulator, at 2,224,758 to 2,225,861
_RS10100
PFLU_RS10105: PFLU_RS10105 - acyl-CoA dehydrogenase family protein, at 2,225,873 to 2,227,060
_RS10105
PFLU_RS10110: PFLU_RS10110 - FMNH2-dependent alkanesulfonate monooxygenase, at 2,227,098 to 2,228,240
_RS10110
Group
Condition
PFLU
_RS10090
PFLU
_RS10095
PFLU
_RS10100
PFLU
_RS10105
PFLU
_RS10110
carbon source
Trisodium citrate (C)
-0.5
-1.0
+0.2
-0.0
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.4
-0.1
-0.2
-0.1
carbon source
L-Arabinose (C)
-0.0
+0.0
+0.1
-0.4
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.6
-0.0
-0.1
+0.1
carbon source
D-Xylose (C)
-0.1
-0.3
+0.1
-0.0
-0.2
carbon source
succinate (C); with MOPS
-0.2
-0.4
+0.2
-0.0
-0.1
carbon source
acetate (C)
+0.3
-0.6
-0.0
-0.2
+0.1
carbon source
NAG (C); with MOPS
-0.1
-0.2
+0.3
-0.3
-0.1
carbon source
acetate (C)
-0.3
-0.2
-0.0
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.3
+0.1
-0.1
-0.1
carbon source
succinate (C); with MOPS
-0.1
-0.7
+0.2
+0.2
+0.0
carbon source
D,L-Lactate (C)
-0.5
+0.1
-0.1
+0.2
+0.0
carbon source
D-Glucose (C); with MOPS
-0.8
+0.7
+0.2
-0.2
+0.0
carbon source
D-Glucose (C)
-0.1
-0.2
+0.5
-0.2
-0.0
carbon source
NAG (C); with MOPS
-0.4
-0.0
+0.3
-0.1
+0.0
carbon source
acetate (C)
-0.4
+0.7
+0.1
+0.0
-0.4
carbon source
L-Arabinose (C); with MOPS
-0.5
+0.1
-0.0
+0.2
+0.1
carbon source
D-Glucose (C)
-0.5
+0.3
+0.0
+0.0
+0.2
carbon source
succinate (C)
-0.1
+0.2
+0.1
-0.2
+0.0
carbon source
L-Arabinose (C)
-0.2
+0.2
-0.1
+0.2
+0.1
carbon source
succinate (C); with MOPS
+0.4
-0.1
+0.1
-0.0
-0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.0
+0.3
-0.2
+0.1
carbon source
D-Glucose (C)
-0.2
+0.5
+0.1
+0.0
-0.1
carbon source
succinate (C)
+0.2
+0.1
+0.3
-0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.2
+0.3
+0.2
-0.0
-0.1
carbon source
succinate (C)
+0.1
+0.3
+0.4
-0.1
-0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.3
+0.2
-0.0
+0.2
carbon source
L-Arabinose (C)
+0.3
+0.1
+0.2
+0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
+0.5
-0.2
+0.4
+0.2
+0.0
carbon source
acetate (C)
-0.0
+0.7
+0.3
+0.1
+0.2
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