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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS10025 and PFLU_RS10030 overlap by 1 nucleotides
PFLU_RS10030 and PFLU_RS10035 overlap by 4 nucleotides
PFLU_RS10035 and PFLU_RS10040 overlap by 4 nucleotides
PFLU_RS10040 and PFLU_RS10045 are separated by 19 nucleotides
PFLU_RS10025: PFLU_RS10025 - metal ABC transporter substrate-binding protein, at 2,213,118 to 2,214,032
_RS10025
PFLU_RS10030: PFLU_RS10030 - metal ABC transporter permease, at 2,214,032 to 2,214,931
_RS10030
PFLU_RS10035: PFLU_RS10035 - metal ABC transporter ATP-binding protein, at 2,214,928 to 2,215,674
_RS10035
PFLU_RS10040: PFLU_RS10040 - zinc ABC transporter substrate-binding protein, at 2,215,671 to 2,216,591
_RS10040
PFLU_RS10045: PFLU_RS10045 - hypothetical protein, at 2,216,611 to 2,217,171
_RS10045
Group
Condition
PFLU
_RS10025
PFLU
_RS10030
PFLU
_RS10035
PFLU
_RS10040
PFLU
_RS10045
carbon source
acetate (C)
+0.0
-0.5
-0.7
+0.1
-0.9
carbon source
L-Arabinose (C)
-0.5
-0.5
+0.2
-0.1
-0.4
carbon source
acetate (C)
-0.7
-0.1
+0.2
+0.1
-0.4
carbon source
L-Arabinose (C); with MOPS
+0.2
-0.0
-0.2
-0.1
-0.7
carbon source
NAG (C); with MOPS
-0.2
+0.0
+0.3
-0.1
-0.8
carbon source
acetate (C)
-0.1
-0.3
-0.4
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
+0.2
-0.5
+0.3
-0.0
-0.7
carbon source
L-Arabinose (C)
-0.2
-0.5
+0.0
+0.0
+0.1
carbon source
D-Glucose (C)
+0.1
-0.0
-0.4
-0.0
-0.2
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.2
+0.0
-0.6
carbon source
Trisodium citrate (C)
+0.1
-0.1
+0.2
-0.1
-0.4
carbon source
succinate (C); with MOPS
-0.2
-0.0
+0.4
+0.1
-0.5
carbon source
succinate (C); with MOPS
+0.2
-0.3
+0.4
+0.1
-0.6
carbon source
D-Glucose (C)
-0.2
+0.1
+0.3
-0.0
-0.3
carbon source
acetate (C)
-0.7
-0.1
+0.9
+0.1
-0.3
carbon source
L-Arabinose (C)
-0.7
-0.3
+0.5
+0.2
+0.2
carbon source
D-Glucose (C)
+0.5
-0.2
+0.2
-0.2
-0.4
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.1
+0.8
-0.1
-0.8
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.3
+0.1
-0.1
-0.1
carbon source
Trisodium citrate (C)
-0.3
+0.2
+0.4
+0.2
-0.6
carbon source
D-Glucose (C); with MOPS
-0.3
-0.1
-0.1
+0.0
+0.6
carbon source
D,L-Lactate (C)
+0.1
-0.4
+0.2
-0.1
+0.3
carbon source
D,L-Lactate (C)
+0.1
-0.2
-0.1
+0.1
+0.3
carbon source
Trisodium citrate (C); with MOPS
-0.4
+0.0
+0.5
+0.0
-0.1
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.3
+0.3
-0.1
+0.3
carbon source
L-Arabinose (C); with MOPS
+0.4
-0.1
+0.5
-0.1
-0.3
carbon source
D-Xylose (C)
+0.0
-0.2
+0.2
-0.1
+0.6
carbon source
NAG (C)
-0.1
-0.1
+0.5
+0.1
+0.3
carbon source
NAG (C); with MOPS
+0.3
-0.1
+0.1
-0.0
+0.4
carbon source
D-Xylose (C)
+0.2
+0.3
+0.1
-0.1
+0.6
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