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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS08910 and PFLU_RS08915 are separated by 332 nucleotides
PFLU_RS08915 and PFLU_RS08920 are separated by 262 nucleotides
PFLU_RS08920 and PFLU_RS08925 overlap by 4 nucleotides
PFLU_RS08925 and PFLU_RS08930 are separated by 268 nucleotides
PFLU_RS08910: PFLU_RS08910 - beta-1,6-glucan synthase, at 1,973,915 to 1,975,468
_RS08910
PFLU_RS08915: PFLU_RS08915 - glycine betaine ABC transporter substrate-binding protein, at 1,975,801 to 1,976,652
_RS08915
PFLU_RS08920: PFLU_RS08920 - DUF485 domain-containing protein, at 1,976,915 to 1,977,226
_RS08920
PFLU_RS08925: PFLU_RS08925 - cation acetate symporter, at 1,977,223 to 1,978,881
_RS08925
PFLU_RS08930: PFLU_RS08930 - citrate (Si)-synthase, at 1,979,150 to 1,980,439
_RS08930
Group
Condition
PFLU
_RS08910
PFLU
_RS08915
PFLU
_RS08920
PFLU
_RS08925
PFLU
_RS08930
carbon source
NAG (C); with MOPS
-0.2
+0.1
-2.3
-1.7
N.D.
carbon source
NAG (C); with MOPS
-0.3
-0.2
-1.9
-1.7
N.D.
carbon source
NAG (C); with MOPS
-0.2
+0.1
-1.7
-1.6
N.D.
carbon source
acetate (C)
-0.1
+0.1
-0.8
-0.9
N.D.
carbon source
D,L-Lactate (C)
-0.0
+0.1
-0.6
-0.6
N.D.
carbon source
D,L-Lactate (C)
+0.0
+0.0
-0.4
-0.5
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.3
-0.2
-0.3
-0.0
N.D.
carbon source
D-Glucose (C); with MOPS
-0.3
-0.2
+0.0
-0.0
N.D.
carbon source
D-Glucose (C); with MOPS
-0.3
+0.1
-0.2
+0.1
N.D.
carbon source
D-Glucose (C)
-0.3
-0.1
-0.0
-0.0
N.D.
carbon source
succinate (C); with MOPS
-0.2
+0.1
-0.3
-0.0
N.D.
carbon source
L-Arabinose (C)
-0.2
-0.2
+0.2
-0.1
N.D.
carbon source
acetate (C)
-0.6
+0.1
+0.1
+0.1
N.D.
carbon source
succinate (C)
-0.4
+0.1
+0.1
-0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.3
+0.1
+0.0
-0.0
N.D.
carbon source
Trisodium citrate (C)
-0.2
+0.1
-0.1
+0.0
N.D.
carbon source
Trisodium citrate (C)
-0.3
+0.2
-0.2
+0.1
N.D.
carbon source
acetate (C)
-0.3
+0.0
+0.1
+0.0
N.D.
carbon source
NAG (C)
+0.1
+0.1
-0.2
-0.1
N.D.
carbon source
Trisodium citrate (C)
-0.2
+0.2
-0.0
-0.0
N.D.
carbon source
acetate (C)
-0.1
+0.0
+0.1
-0.2
N.D.
carbon source
L-Arabinose (C)
-0.2
+0.3
-0.2
-0.0
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.3
+0.1
+0.0
+0.1
N.D.
carbon source
acetate (C)
-0.5
+0.3
-0.0
+0.2
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.4
+0.1
+0.3
+0.1
N.D.
carbon source
D-Xylose (C)
+0.1
+0.1
-0.2
-0.1
N.D.
carbon source
NAG (C)
+0.1
+0.1
+0.0
-0.2
N.D.
carbon source
D-Glucose (C); with MOPS
+0.0
+0.2
-0.2
+0.0
N.D.
carbon source
L-Arabinose (C)
-0.1
-0.0
+0.1
+0.2
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.3
-0.0
+0.2
N.D.
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