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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS08870 and PFLU_RS08875 are separated by 256 nucleotides
PFLU_RS08875 and PFLU_RS08880 are separated by 116 nucleotides
PFLU_RS08880 and PFLU_RS08885 are separated by 134 nucleotides
PFLU_RS08885 and PFLU_RS08890 are separated by 168 nucleotides
PFLU_RS08870: PFLU_RS08870 - glyoxylate carboligase, at 1,966,043 to 1,967,818
_RS08870
PFLU_RS08875: PFLU_RS08875 - heme-binding protein, at 1,968,075 to 1,968,515
_RS08875
PFLU_RS08880: PFLU_RS08880 - TetR/AcrR family transcriptional regulator, at 1,968,632 to 1,969,237
_RS08880
PFLU_RS08885: PFLU_RS08885 - DUF808 domain-containing protein, at 1,969,372 to 1,970,286
_RS08885
PFLU_RS08890: PFLU_RS08890 - hypothetical protein, at 1,970,455 to 1,970,886
_RS08890
Group
Condition
PFLU
_RS08870
PFLU
_RS08875
PFLU
_RS08880
PFLU
_RS08885
PFLU
_RS08890
carbon source
D-Xylose (C)
-0.2
-0.9
-0.1
-0.1
+0.0
carbon source
acetate (C)
+0.1
-0.7
-0.1
-0.1
+0.0
carbon source
NAG (C); with MOPS
-0.2
-0.2
-0.2
-0.4
+0.2
carbon source
L-Arabinose (C)
+0.0
-0.7
+0.3
-0.4
+0.1
carbon source
NAG (C); with MOPS
-0.2
-0.3
-0.0
-0.2
+0.1
carbon source
NAG (C)
-0.1
-0.1
-0.1
-0.1
-0.2
carbon source
succinate (C)
-0.1
+0.2
+0.0
-0.3
-0.2
carbon source
NAG (C); with MOPS
-0.2
-0.3
+0.2
-0.2
+0.1
carbon source
succinate (C)
-0.1
+0.3
+0.0
-0.5
-0.0
carbon source
NAG (C)
-0.1
-0.2
-0.2
+0.1
+0.1
carbon source
acetate (C)
+0.0
-0.4
+0.7
-0.1
-0.4
carbon source
succinate (C); with MOPS
-0.1
-0.6
-0.0
+0.3
+0.2
carbon source
L-Arabinose (C)
-0.4
+0.1
+0.4
-0.2
-0.1
carbon source
acetate (C)
-0.3
+0.6
+0.4
-0.9
+0.2
carbon source
succinate (C)
-0.1
+0.0
+0.2
-0.2
+0.1
carbon source
succinate (C); with MOPS
-0.1
+0.4
-0.1
-0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.4
-0.1
+0.1
+0.4
+0.0
carbon source
D-Glucose (C); with MOPS
-0.1
+0.0
+0.3
-0.2
+0.0
carbon source
Trisodium citrate (C)
+0.2
-0.3
+0.1
+0.0
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.2
+0.2
+0.2
-0.2
carbon source
Trisodium citrate (C)
-0.1
+0.3
+0.2
-0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.5
+0.1
-0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.2
+0.2
-0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.2
+0.2
+0.0
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.1
+0.2
+0.2
+0.0
carbon source
D-Glucose (C)
-0.0
+0.3
+0.2
-0.0
-0.0
carbon source
D-Glucose (C)
-0.2
+0.3
+0.1
+0.1
+0.2
carbon source
D-Glucose (C)
-0.2
+0.6
+0.2
+0.1
-0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.3
+0.6
-0.1
+0.0
carbon source
acetate (C)
-0.1
+0.8
+0.5
+0.2
+0.1
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