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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS08330 and PFLU_RS08335 are separated by 219 nucleotides
PFLU_RS08335 and PFLU_RS08340 are separated by 112 nucleotides
PFLU_RS08340 and PFLU_RS08345 are separated by 45 nucleotides
PFLU_RS08345 and PFLU_RS08350 overlap by 1 nucleotides
PFLU_RS08330: PFLU_RS08330 - ABC transporter ATP-binding protein, at 1,863,748 to 1,864,674
_RS08330
PFLU_RS08335: PFLU_RS08335 - hypothetical protein, at 1,864,894 to 1,865,880
_RS08335
PFLU_RS08340: PFLU_RS08340 - transcription elongation factor GreB, at 1,865,993 to 1,866,466
_RS08340
PFLU_RS08345: PFLU_RS08345 - ABC transporter permease, at 1,866,512 to 1,869,022
_RS08345
PFLU_RS08350: PFLU_RS08350 - ABC transporter ATP-binding protein, at 1,869,022 to 1,869,705
_RS08350
Group
Condition
PFLU
_RS08330
PFLU
_RS08335
PFLU
_RS08340
PFLU
_RS08345
PFLU
_RS08350
carbon source
L-Arabinose (C)
+0.3
+0.3
-1.3
+0.1
-0.9
carbon source
Trisodium citrate (C); with MOPS
-0.3
-0.0
+0.1
+0.0
-1.2
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
-1.2
-0.0
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.3
-1.3
+0.1
-0.1
carbon source
D-Glucose (C); with MOPS
+0.0
+0.2
-0.0
+0.1
-1.1
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.3
-1.6
+0.1
+0.6
carbon source
D-Xylose (C)
-0.2
-0.2
-0.1
+0.0
-0.3
carbon source
L-Arabinose (C)
-0.0
-0.0
-0.8
+0.0
+0.1
carbon source
acetate (C)
-0.1
+0.3
-0.1
+0.1
-0.7
carbon source
L-Arabinose (C)
+0.2
+0.4
-0.8
-0.1
-0.0
carbon source
succinate (C)
-0.0
+0.0
+0.1
+0.1
-0.5
carbon source
NAG (C); with MOPS
-0.2
+0.2
+0.0
+0.0
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.1
+0.1
+0.1
-0.2
carbon source
NAG (C)
-0.2
+0.1
+0.1
+0.0
-0.1
carbon source
D-Glucose (C)
-0.0
+0.2
+0.3
-0.0
-0.5
carbon source
D-Xylose (C)
-0.1
-0.0
-0.0
-0.1
+0.3
carbon source
D-Glucose (C); with MOPS
-0.0
+0.2
+0.1
+0.0
-0.1
carbon source
NAG (C); with MOPS
-0.3
-0.0
+0.2
+0.1
+0.1
carbon source
D,L-Lactate (C)
-0.0
+0.0
-0.1
-0.1
+0.4
carbon source
succinate (C); with MOPS
-0.1
+0.2
+0.1
+0.0
-0.0
carbon source
Trisodium citrate (C)
-0.1
+0.2
-0.0
-0.0
+0.3
carbon source
acetate (C)
-0.1
+0.2
-0.4
-0.1
+0.7
carbon source
D-Glucose (C)
-0.2
+0.1
+0.1
+0.1
+0.4
carbon source
succinate (C)
-0.1
+0.3
-0.1
+0.1
+0.3
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.1
+0.0
+0.7
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.3
-0.0
-0.0
+0.8
carbon source
succinate (C); with MOPS
-0.0
+0.1
+0.0
+0.2
+0.6
carbon source
D-Glucose (C)
-0.1
+0.1
+0.2
+0.1
+0.7
carbon source
acetate (C)
-0.0
+0.8
-0.0
+0.0
+0.2
carbon source
succinate (C)
+0.1
+0.1
-0.1
+0.1
+0.9
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