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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS07820 and PFLU_RS07825 are separated by 45 nucleotides
PFLU_RS07825 and PFLU_RS07830 are separated by 151 nucleotides
PFLU_RS07830 and PFLU_RS07835 overlap by 1 nucleotides
PFLU_RS07835 and PFLU_RS30480 are separated by 136 nucleotides
PFLU_RS07820: PFLU_RS07820 - phage major capsid protein, P2 family, at 1,739,765 to 1,740,658
_RS07820
PFLU_RS07825: PFLU_RS07825 - GPO family capsid scaffolding protein, at 1,740,704 to 1,741,582
_RS07825
PFLU_RS07830: PFLU_RS07830 - terminase ATPase subunit family protein, at 1,741,734 to 1,743,491
_RS07830
PFLU_RS07835: PFLU_RS07835 - phage portal protein, at 1,743,491 to 1,744,543
_RS07835
PFLU_RS30480: PFLU_RS30480 - hypothetical protein, at 1,744,680 to 1,745,666
_RS30480
Group
Condition
PFLU
_RS07820
PFLU
_RS07825
PFLU
_RS07830
PFLU
_RS07835
PFLU
_RS30480
carbon source
Trisodium citrate (C)
-0.1
-0.3
-0.1
+0.0
-0.7
carbon source
acetate (C)
-0.4
-0.0
+0.1
+0.1
-0.2
carbon source
D-Glucose (C); with MOPS
-0.1
-0.1
+0.1
+0.1
-0.3
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.2
-0.0
+0.2
-0.3
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.2
-0.0
+0.2
-0.5
carbon source
succinate (C)
-0.3
-0.2
+0.0
-0.0
+0.3
carbon source
D-Glucose (C); with MOPS
-0.4
+0.2
+0.1
+0.1
-0.2
carbon source
L-Arabinose (C)
+0.3
+0.2
+0.1
-0.1
-0.7
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.0
+0.1
+0.1
-0.3
carbon source
D,L-Lactate (C)
+0.0
-0.0
-0.1
-0.1
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.1
+0.1
+0.1
-0.0
carbon source
D-Glucose (C)
-0.0
+0.2
+0.1
+0.2
-0.3
carbon source
Trisodium citrate (C)
-0.2
+0.1
+0.1
+0.0
+0.1
carbon source
acetate (C)
-0.1
-0.1
+0.0
+0.0
+0.3
carbon source
NAG (C)
+0.1
+0.0
-0.0
-0.1
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.4
+0.5
-0.1
+0.0
+0.3
carbon source
D-Xylose (C)
+0.1
+0.1
+0.0
-0.1
+0.2
carbon source
D,L-Lactate (C)
+0.1
+0.1
+0.0
-0.1
+0.3
carbon source
NAG (C); with MOPS
+0.1
+0.0
+0.0
+0.1
+0.2
carbon source
succinate (C)
+0.1
+0.0
+0.2
+0.1
+0.1
carbon source
acetate (C)
-0.6
+0.2
+0.1
+0.3
+0.6
carbon source
L-Arabinose (C)
-0.3
+0.1
+0.1
-0.0
+0.6
carbon source
succinate (C); with MOPS
+0.1
+0.1
-0.0
+0.1
+0.5
carbon source
D-Xylose (C)
+0.3
+0.1
-0.1
+0.1
+0.3
carbon source
NAG (C)
+0.1
+0.1
+0.1
+0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.3
+0.1
-0.0
+0.4
carbon source
NAG (C); with MOPS
+0.2
+0.3
+0.2
+0.2
+0.0
carbon source
acetate (C)
-0.2
+0.2
+0.0
+0.0
+0.9
carbon source
NAG (C); with MOPS
+0.3
+0.2
+0.1
-0.0
+0.3
carbon source
L-Arabinose (C)
-0.1
+0.2
+0.0
+0.2
+0.8
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