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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS07560 and PFLU_RS07565 overlap by 4 nucleotides
PFLU_RS07565 and PFLU_RS07570 are separated by 133 nucleotides
PFLU_RS07570 and PFLU_RS07575 overlap by 1 nucleotides
PFLU_RS07575 and PFLU_RS07580 are separated by 99 nucleotides
PFLU_RS07560: PFLU_RS07560 - allophanate hydrolase subunit 1, at 1,678,165 to 1,678,869
_RS07560
PFLU_RS07565: PFLU_RS07565 - biotin-dependent carboxyltransferase, at 1,678,866 to 1,679,774
_RS07565
PFLU_RS07570: PFLU_RS07570 - VWA domain-containing protein, at 1,679,908 to 1,681,086
_RS07570
PFLU_RS07575: PFLU_RS07575 - MoxR family ATPase, at 1,681,086 to 1,681,931
_RS07575
PFLU_RS07580: PFLU_RS07580 - DUF748 domain-containing protein, at 1,682,031 to 1,683,107
_RS07580
Group
Condition
PFLU
_RS07560
PFLU
_RS07565
PFLU
_RS07570
PFLU
_RS07575
PFLU
_RS07580
carbon source
L-Arabinose (C)
-0.6
-0.3
+0.0
+0.1
-0.1
carbon source
NAG (C); with MOPS
-0.7
-0.5
+0.2
+0.2
-0.0
carbon source
L-Arabinose (C)
-0.9
-0.2
-0.2
+0.2
+0.3
carbon source
succinate (C)
-0.1
-0.5
-0.1
+0.0
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.5
-0.4
-0.1
-0.0
+0.3
carbon source
D-Glucose (C)
-0.2
-0.3
-0.1
+0.1
-0.0
carbon source
acetate (C)
-0.5
-0.1
+0.1
-0.2
+0.0
carbon source
Trisodium citrate (C)
-0.4
-0.3
+0.0
+0.1
+0.0
carbon source
NAG (C)
-0.4
-0.4
+0.1
+0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.2
+0.1
+0.0
-0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.3
-0.1
+0.2
-0.0
carbon source
succinate (C); with MOPS
-0.3
-0.1
-0.0
+0.1
-0.0
carbon source
D,L-Lactate (C)
-0.4
+0.0
+0.1
-0.1
-0.0
carbon source
succinate (C); with MOPS
-0.2
-0.4
+0.1
+0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.2
+0.1
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.2
-0.0
+0.2
-0.1
carbon source
NAG (C)
-0.2
-0.3
+0.1
+0.2
+0.0
carbon source
succinate (C)
+0.0
-0.2
+0.2
+0.1
-0.3
carbon source
D-Glucose (C)
-0.3
+0.0
+0.0
+0.1
+0.0
carbon source
acetate (C)
-0.2
-0.4
-0.0
+0.6
+0.0
carbon source
NAG (C); with MOPS
+0.1
-0.4
+0.1
-0.0
+0.2
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
+0.1
-0.1
-0.1
carbon source
NAG (C); with MOPS
-0.4
-0.1
+0.0
+0.4
+0.2
carbon source
acetate (C)
+0.2
+0.1
+0.1
-0.1
-0.0
carbon source
D-Glucose (C)
+0.2
-0.1
+0.1
+0.1
+0.0
carbon source
D-Glucose (C); with MOPS
+0.2
-0.2
+0.1
+0.1
+0.1
carbon source
D-Xylose (C)
-0.1
+0.3
+0.1
-0.1
+0.2
carbon source
L-Arabinose (C)
+0.3
-0.2
+0.2
+0.2
-0.1
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.1
+0.1
+0.0
carbon source
acetate (C)
+0.1
+0.3
-0.0
-0.0
+0.6
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