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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS07380 and PFLU_RS07385 are separated by 49 nucleotides
PFLU_RS07385 and PFLU_RS07390 are separated by 125 nucleotides
PFLU_RS07390 and PFLU_RS07395 are separated by 137 nucleotides
PFLU_RS07395 and PFLU_RS07400 are separated by 203 nucleotides
PFLU_RS07380: PFLU_RS07380 - LysR family transcriptional regulator, at 1,642,218 to 1,643,141
_RS07380
PFLU_RS07385: PFLU_RS07385 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 1,643,191 to 1,643,553
_RS07385
PFLU_RS07390: PFLU_RS07390 - LysR family transcriptional regulator, at 1,643,679 to 1,644,614
_RS07390
PFLU_RS07395: PFLU_RS07395 - MFS transporter, at 1,644,752 to 1,645,939
_RS07395
PFLU_RS07400: PFLU_RS07400 - aldehyde dehydrogenase family protein, at 1,646,143 to 1,647,585
_RS07400
Group
Condition
PFLU
_RS07380
PFLU
_RS07385
PFLU
_RS07390
PFLU
_RS07395
PFLU
_RS07400
carbon source
acetate (C)
-0.8
+0.1
+0.1
-0.3
-0.1
carbon source
succinate (C)
-0.3
-0.1
-0.0
+0.0
+0.0
carbon source
D-Glucose (C)
-0.6
-0.2
+0.1
+0.2
+0.3
carbon source
Trisodium citrate (C)
+0.1
-0.2
-0.1
-0.2
+0.2
carbon source
D-Glucose (C)
-0.4
-0.1
+0.0
+0.2
+0.1
carbon source
Trisodium citrate (C)
-0.4
+0.2
-0.2
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
-0.4
-0.1
+0.1
+0.2
+0.0
carbon source
L-Arabinose (C)
+0.1
-0.4
-0.1
+0.2
-0.0
carbon source
acetate (C)
-0.1
-0.1
+0.1
+0.1
-0.2
carbon source
NAG (C)
+0.2
-0.3
-0.0
+0.1
-0.1
carbon source
D-Glucose (C)
-0.3
+0.0
+0.1
+0.0
+0.1
carbon source
D,L-Lactate (C)
-0.1
+0.0
+0.1
+0.1
-0.1
carbon source
acetate (C)
-0.0
+0.3
-0.1
+0.3
-0.5
carbon source
acetate (C)
+0.2
+0.3
+0.0
-0.2
-0.3
carbon source
NAG (C); with MOPS
+0.1
-0.2
+0.1
+0.0
-0.0
carbon source
D-Xylose (C)
+0.1
-0.1
+0.0
+0.2
-0.1
carbon source
succinate (C)
+0.0
-0.3
+0.1
+0.1
+0.2
carbon source
NAG (C)
-0.0
-0.1
+0.2
+0.1
-0.1
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
-0.2
+0.1
+0.0
carbon source
Trisodium citrate (C)
+0.1
-0.1
+0.0
-0.0
+0.3
carbon source
succinate (C); with MOPS
+0.2
-0.1
+0.1
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.1
-0.2
+0.3
+0.1
carbon source
D,L-Lactate (C)
+0.1
+0.3
+0.0
-0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.3
-0.3
+0.1
+0.3
+0.5
carbon source
NAG (C); with MOPS
+0.0
-0.1
+0.1
-0.0
+0.4
carbon source
succinate (C)
+0.0
+0.2
+0.2
-0.0
+0.0
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
+0.1
+0.2
+0.2
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
+0.1
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.6
-0.2
+0.0
-0.1
+0.3
carbon source
NAG (C); with MOPS
-0.0
+0.0
+0.2
+0.1
+0.3
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