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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS07245 and PFLU_RS07250 are separated by 65 nucleotides
PFLU_RS07250 and PFLU_RS07255 are separated by 95 nucleotides
PFLU_RS07255 and PFLU_RS07260 are separated by 31 nucleotides
PFLU_RS07260 and PFLU_RS07265 are separated by 163 nucleotides
PFLU_RS07245: PFLU_RS07245 - DegQ family serine endoprotease, at 1,615,511 to 1,616,947
_RS07245
PFLU_RS07250: PFLU_RS07250 - M48 family metallopeptidase, at 1,617,013 to 1,618,446
_RS07250
PFLU_RS07255: PFLU_RS07255 - sulfurtransferase TusA family protein, at 1,618,542 to 1,618,781
_RS07255
PFLU_RS07260: PFLU_RS07260 - AI-2E family transporter, at 1,618,813 to 1,619,883
_RS07260
PFLU_RS07265: PFLU_RS07265 - peroxiredoxin, at 1,620,047 to 1,620,520
_RS07265
Group
Condition
PFLU
_RS07245
PFLU
_RS07250
PFLU
_RS07255
PFLU
_RS07260
PFLU
_RS07265
carbon source
acetate (C)
-1.3
-0.3
-3.8
+0.1
+0.2
carbon source
acetate (C)
-1.1
-0.6
-3.5
+0.0
+0.4
carbon source
L-Arabinose (C)
-1.4
-0.7
-2.6
+0.1
+0.0
carbon source
acetate (C)
-1.3
-0.7
-2.2
+0.2
+0.1
carbon source
L-Arabinose (C)
-1.7
-0.6
-1.6
-0.1
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.5
-0.3
-2.5
+0.1
+0.1
carbon source
L-Arabinose (C)
-1.6
-0.3
-1.1
-0.0
+0.1
carbon source
NAG (C); with MOPS
-0.6
-0.0
-2.2
-0.1
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.3
-0.4
-2.1
+0.1
+0.4
carbon source
NAG (C); with MOPS
-0.5
-0.0
-1.6
-0.2
+0.2
carbon source
NAG (C); with MOPS
-0.5
-0.3
-1.2
-0.0
+0.2
carbon source
D-Glucose (C)
-1.0
+0.1
-0.6
-0.2
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.1
-1.4
-0.1
-0.0
carbon source
D-Glucose (C)
-0.2
+0.1
-1.4
-0.0
+0.1
carbon source
Trisodium citrate (C)
-0.4
-0.1
-1.1
+0.0
+0.3
carbon source
D-Glucose (C)
-0.4
-0.0
-1.0
-0.0
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.2
-0.3
-1.2
+0.0
+0.1
carbon source
Trisodium citrate (C)
-0.1
+0.0
-1.2
-0.1
+0.2
carbon source
Trisodium citrate (C)
-0.2
-0.0
-0.8
-0.0
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
-0.0
-1.0
-0.1
+0.3
carbon source
D-Xylose (C)
-0.6
+0.1
-0.2
+0.2
-0.1
carbon source
D-Xylose (C)
-0.6
-0.2
+0.2
+0.0
-0.1
carbon source
D-Glucose (C); with MOPS
-0.1
+0.2
-1.0
+0.1
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.1
-0.6
+0.0
+0.2
carbon source
succinate (C); with MOPS
+0.1
+0.3
-0.7
-0.0
-0.0
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
-0.4
+0.1
+0.2
carbon source
succinate (C); with MOPS
+0.4
+0.3
-0.6
+0.1
-0.0
carbon source
succinate (C)
+0.3
+0.2
-0.3
-0.1
+0.0
carbon source
succinate (C)
+0.1
+0.3
-0.2
+0.1
+0.2
carbon source
succinate (C)
+0.2
+0.5
-0.5
+0.1
+0.3
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