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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS05785 and PFLU_RS05790 are separated by 21 nucleotides
PFLU_RS05790 and PFLU_RS05795 are separated by 3 nucleotides
PFLU_RS05795 and PFLU_RS05800 are separated by 9 nucleotides
PFLU_RS05800 and PFLU_RS05805 overlap by 4 nucleotides
PFLU_RS05785: PFLU_RS05785 - hypothetical protein, at 1,305,089 to 1,305,433
_RS05785
PFLU_RS05790: PFLU_RS05790 - hypothetical protein, at 1,305,455 to 1,305,970
_RS05790
PFLU_RS05795: PFLU_RS05795 - phage baseplate assembly protein V, at 1,305,974 to 1,306,585
_RS05795
PFLU_RS05800: PFLU_RS05800 - phage baseplate protein, at 1,306,595 to 1,306,927
_RS05800
PFLU_RS05805: PFLU_RS05805 - baseplate J protein, at 1,306,924 to 1,307,919
_RS05805
Group
Condition
PFLU
_RS05785
PFLU
_RS05790
PFLU
_RS05795
PFLU
_RS05800
PFLU
_RS05805
carbon source
acetate (C)
-0.4
-0.2
-0.4
-1.7
-0.1
carbon source
succinate (C)
-0.1
+0.0
-0.0
-1.9
-0.2
carbon source
succinate (C)
+0.1
-0.5
-0.0
-0.9
-0.0
carbon source
NAG (C); with MOPS
-0.4
+0.0
-0.3
-0.2
-0.1
carbon source
Trisodium citrate (C)
+0.2
+0.1
-0.2
-1.1
+0.1
carbon source
L-Arabinose (C)
-0.1
+0.2
+0.2
-1.0
-0.2
carbon source
L-Arabinose (C)
-0.3
-0.3
+0.2
-0.7
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.1
-0.5
-0.2
+0.0
carbon source
acetate (C)
+0.6
-0.6
-0.2
-0.4
-0.1
carbon source
succinate (C); with MOPS
+0.1
+0.4
-0.1
-1.0
+0.0
carbon source
acetate (C)
-0.1
+0.4
-0.0
-1.0
+0.3
carbon source
L-Arabinose (C)
-0.2
-0.2
+0.1
-0.2
+0.1
carbon source
D-Glucose (C)
+0.1
+0.2
+0.1
-0.7
-0.0
carbon source
acetate (C)
-0.1
+0.1
+0.0
-0.6
+0.2
carbon source
D-Glucose (C); with MOPS
+0.2
+0.2
-0.4
-0.4
+0.0
carbon source
Trisodium citrate (C); with MOPS
-0.3
-0.2
+0.3
-0.0
-0.1
carbon source
succinate (C)
-0.0
+0.4
-0.2
-0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.5
-0.3
-0.1
-0.0
carbon source
D,L-Lactate (C)
-0.1
+0.2
+0.2
-0.3
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.4
-0.4
+0.2
+0.7
-0.0
carbon source
NAG (C); with MOPS
-0.1
-0.3
+0.0
+0.7
+0.0
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.1
+0.3
-0.1
carbon source
D-Glucose (C)
+0.3
-0.1
+0.0
+0.2
-0.0
carbon source
succinate (C); with MOPS
+0.3
-0.4
-0.1
+0.9
-0.1
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
-0.1
+0.7
+0.0
carbon source
D-Xylose (C)
+0.0
+0.2
+0.2
+0.3
-0.0
carbon source
D-Glucose (C); with MOPS
-0.0
+0.3
+0.3
+0.0
+0.1
carbon source
D,L-Lactate (C)
+0.0
+0.1
+0.2
+0.3
+0.1
carbon source
D-Glucose (C)
-0.2
+0.2
-0.1
+0.9
+0.0
carbon source
NAG (C); with MOPS
+0.2
+0.3
+0.2
+0.8
-0.1
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