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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS05380 and PFLU_RS05385 are separated by 54 nucleotides
PFLU_RS05385 and PFLU_RS05390 are separated by 416 nucleotides
PFLU_RS05390 and PFLU_RS05395 are separated by 147 nucleotides
PFLU_RS05395 and PFLU_RS05400 are separated by 4 nucleotides
PFLU_RS05380: PFLU_RS05380 - group 1 truncated hemoglobin, at 1,200,553 to 1,200,972
_RS05380
PFLU_RS05385: PFLU_RS05385 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 1,201,027 to 1,203,438
_RS05385
PFLU_RS05390: PFLU_RS05390 - TonB-dependent receptor, at 1,203,855 to 1,205,873
_RS05390
PFLU_RS05395: PFLU_RS05395 - DUF2132 domain-containing protein, at 1,206,021 to 1,206,254
_RS05395
PFLU_RS05400: PFLU_RS05400 - hypothetical protein, at 1,206,259 to 1,206,882
_RS05400
Group
Condition
PFLU
_RS05380
PFLU
_RS05385
PFLU
_RS05390
PFLU
_RS05395
PFLU
_RS05400
carbon source
D-Glucose (C)
-0.4
-2.1
+0.0
-0.2
+0.1
carbon source
D-Glucose (C)
+0.0
-1.8
+0.1
+0.0
+0.0
carbon source
D-Xylose (C)
-0.3
-0.9
+0.1
+0.1
-0.2
carbon source
D-Glucose (C)
+0.5
-1.8
+0.2
+0.0
+0.0
carbon source
Trisodium citrate (C)
-0.7
+0.0
+0.1
-0.3
+0.1
carbon source
D-Xylose (C)
-0.1
-0.9
+0.2
+0.2
-0.1
carbon source
NAG (C); with MOPS
-0.4
-0.0
-0.1
+0.1
-0.1
carbon source
Trisodium citrate (C)
-0.4
-0.1
+0.1
-0.1
+0.1
carbon source
acetate (C)
-0.3
+0.1
+0.0
-0.1
-0.1
carbon source
D-Glucose (C); with MOPS
+0.1
-0.5
+0.0
-0.2
+0.1
carbon source
D-Glucose (C); with MOPS
-0.1
-0.2
+0.2
-0.1
-0.0
carbon source
acetate (C)
-0.5
-0.1
-0.1
+0.2
+0.3
carbon source
succinate (C)
+0.3
-0.2
+0.1
-0.0
-0.3
carbon source
acetate (C)
+0.5
-0.2
-0.1
-0.1
-0.3
carbon source
NAG (C)
-0.1
-0.1
+0.1
+0.1
+0.0
carbon source
acetate (C)
-0.0
-0.2
+0.1
-0.1
+0.3
carbon source
succinate (C); with MOPS
+0.3
+0.1
-0.0
+0.1
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.0
+0.0
+0.3
+0.1
carbon source
L-Arabinose (C); with MOPS
+0.4
-0.0
-0.0
+0.0
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.2
+0.2
-0.3
+0.2
carbon source
Trisodium citrate (C); with MOPS
+0.2
+0.1
+0.0
+0.1
+0.0
carbon source
NAG (C); with MOPS
+0.2
+0.1
+0.1
+0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.0
+0.1
+0.2
-0.0
carbon source
Trisodium citrate (C); with MOPS
+0.2
+0.0
+0.2
+0.1
+0.0
carbon source
L-Arabinose (C)
+1.5
-0.0
-0.1
-1.0
+0.2
carbon source
L-Arabinose (C)
+1.3
-0.6
-0.0
-0.1
+0.1
carbon source
D-Glucose (C); with MOPS
+0.6
-0.1
+0.0
-0.0
+0.3
carbon source
succinate (C)
+0.4
-0.0
+0.1
+0.4
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.7
+0.0
+0.1
+0.1
carbon source
L-Arabinose (C)
+1.6
+0.6
+0.1
-0.4
-0.0
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