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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS05060 and PFLU_RS05065 are separated by 75 nucleotides
PFLU_RS05065 and PFLU_RS05070 are separated by 109 nucleotides
PFLU_RS05070 and PFLU_RS05075 are separated by 95 nucleotides
PFLU_RS05075 and PFLU_RS05080 are separated by 1 nucleotides
PFLU_RS05060: PFLU_RS05060 - GIY-YIG nuclease family protein, at 1,128,723 to 1,128,998
_RS05060
PFLU_RS05065: PFLU_RS05065 - glutathione S-transferase family protein, at 1,129,074 to 1,130,009
_RS05065
PFLU_RS05070: PFLU_RS05070 - TonB-dependent receptor, at 1,130,119 to 1,132,539
_RS05070
PFLU_RS05075: PFLU_RS05075 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 1,132,635 to 1,134,092
_RS05075
PFLU_RS05080: PFLU_RS05080 - IclR family transcriptional regulator, at 1,134,094 to 1,134,873
_RS05080
Group
Condition
PFLU
_RS05060
PFLU
_RS05065
PFLU
_RS05070
PFLU
_RS05075
PFLU
_RS05080
carbon source
L-Arabinose (C)
+0.2
-0.7
+0.2
+0.1
-3.4
carbon source
L-Arabinose (C); with MOPS
+0.2
-0.2
+0.1
+0.2
-2.6
carbon source
D,L-Lactate (C)
-0.2
-0.1
-0.1
-0.0
-0.6
carbon source
succinate (C)
-0.1
+0.2
+0.0
-0.2
-0.5
carbon source
NAG (C)
-0.1
-0.3
-0.0
+0.1
-0.2
carbon source
NAG (C)
-0.1
+0.2
-0.0
-0.0
-0.5
carbon source
D-Xylose (C)
+0.1
-0.3
-0.1
-0.1
-0.1
carbon source
NAG (C); with MOPS
+0.1
+0.2
+0.1
-0.2
-0.7
carbon source
succinate (C)
+0.3
+0.1
-0.0
-0.1
-0.6
carbon source
D-Glucose (C); with MOPS
-0.4
-0.1
+0.1
-0.0
+0.3
carbon source
acetate (C)
-0.1
-0.8
-0.0
+0.0
+0.7
carbon source
NAG (C); with MOPS
-0.3
-0.3
+0.0
+0.3
+0.2
carbon source
L-Arabinose (C)
+0.0
-0.3
-0.1
+0.0
+0.4
carbon source
succinate (C); with MOPS
+0.4
-0.1
+0.0
-0.2
-0.0
carbon source
succinate (C)
-0.3
-0.2
+0.0
+0.1
+0.6
carbon source
Trisodium citrate (C); with MOPS
+0.4
-0.5
-0.0
-0.0
+0.4
carbon source
D-Glucose (C); with MOPS
-0.2
+0.1
-0.0
-0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.1
-0.2
+0.2
+0.2
carbon source
D-Xylose (C)
+0.3
-0.1
-0.0
+0.1
+0.2
carbon source
D-Glucose (C)
-0.4
+0.2
+0.0
-0.1
+0.8
carbon source
D-Glucose (C); with MOPS
-0.2
+0.2
+0.1
-0.0
+0.7
carbon source
succinate (C); with MOPS
+0.1
-0.2
+0.1
+0.1
+0.7
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.1
+0.1
+0.4
carbon source
D-Glucose (C)
-0.1
+0.0
+0.1
-0.1
+0.8
carbon source
acetate (C)
+0.4
-0.4
-0.0
+0.2
+0.6
carbon source
L-Arabinose (C)
+0.5
-0.2
+0.0
+0.3
+0.6
carbon source
Trisodium citrate (C); with MOPS
+0.2
+0.0
-0.1
+0.2
+1.1
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.1
+0.1
+1.1
carbon source
D-Glucose (C)
+0.0
+0.4
+0.0
+0.2
+1.0
carbon source
acetate (C)
+0.2
+0.4
-0.2
-0.0
+1.5
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