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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS04830 and PFLU_RS30400 are separated by 79 nucleotides
PFLU_RS30400 and PFLU_RS04835 are separated by 105 nucleotides
PFLU_RS04835 and PFLU_RS04840 are separated by 84 nucleotides
PFLU_RS04840 and PFLU_RS04845 are separated by 14 nucleotides
PFLU_RS04830: PFLU_RS04830 - HlyD family secretion protein, at 1,080,942 to 1,081,805
_RS04830
PFLU_RS30400: PFLU_RS30400 - NAD synthetase, at 1,081,885 to 1,082,112
_RS30400
PFLU_RS04835: PFLU_RS04835 - hypothetical protein, at 1,082,218 to 1,082,619
_RS04835
PFLU_RS04840: PFLU_RS04840 - SDR family oxidoreductase, at 1,082,704 to 1,083,516
_RS04840
PFLU_RS04845: PFLU_RS04845 - hypothetical protein, at 1,083,531 to 1,083,995
_RS04845
Group
Condition
PFLU
_RS04830
PFLU
_RS30400
PFLU
_RS04835
PFLU
_RS04840
PFLU
_RS04845
carbon source
acetate (C)
-0.9
-0.7
-3.9
-1.1
-0.4
carbon source
L-Arabinose (C)
-0.3
-0.1
-3.8
+0.2
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.2
-2.5
-0.0
-0.0
carbon source
acetate (C)
+0.2
+0.1
-0.9
-1.4
+0.0
carbon source
Trisodium citrate (C); with MOPS
-0.2
-1.0
+0.0
-0.1
-0.6
carbon source
D-Glucose (C)
+0.1
+0.1
-1.2
-0.3
-0.2
carbon source
L-Arabinose (C)
-0.5
-0.9
+0.9
-1.1
+0.0
carbon source
succinate (C)
-0.0
-0.2
-0.8
+0.2
-0.5
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.1
-1.2
-0.1
+0.2
carbon source
D,L-Lactate (C)
+0.0
-0.1
-1.0
+0.1
-0.2
carbon source
NAG (C); with MOPS
+0.0
+0.4
-0.6
-0.2
-0.1
carbon source
D-Glucose (C); with MOPS
-0.1
-0.3
+1.1
-1.3
+0.1
carbon source
NAG (C); with MOPS
-0.3
+0.9
-0.6
-0.4
-0.0
carbon source
D,L-Lactate (C)
-0.1
+0.2
-0.3
-0.6
+0.4
carbon source
acetate (C)
+0.1
-0.3
+0.3
+0.5
-0.4
carbon source
L-Arabinose (C)
-0.1
+0.7
-0.4
+0.0
+0.0
carbon source
Trisodium citrate (C)
+0.1
+0.2
-0.7
+0.7
+0.2
carbon source
succinate (C)
-0.2
+0.5
+0.9
-0.9
+0.2
carbon source
succinate (C); with MOPS
+0.1
+0.3
-0.6
+0.3
+0.6
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.4
+0.6
-0.4
+0.1
carbon source
succinate (C)
-0.1
+0.1
+0.8
+0.1
-0.2
carbon source
NAG (C)
+0.1
+0.5
+0.4
-0.2
+0.2
carbon source
acetate (C)
-0.3
+0.4
+0.6
+0.0
+0.3
carbon source
succinate (C); with MOPS
+0.0
-0.1
+1.3
-0.3
+0.2
carbon source
NAG (C); with MOPS
-0.0
-0.1
+0.5
+0.5
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.4
+1.2
-0.3
+0.1
carbon source
D-Glucose (C); with MOPS
-0.0
+0.4
+0.6
-0.3
+0.6
carbon source
D-Glucose (C)
-0.0
+0.2
+0.5
+0.6
+0.2
carbon source
D-Xylose (C)
-0.0
+0.3
+0.4
+0.4
+0.4
carbon source
D-Glucose (C); with MOPS
-0.1
+0.3
+1.0
+0.7
+0.0
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