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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS04785 and PFLU_RS04790 are separated by 34 nucleotides
PFLU_RS04790 and PFLU_RS04795 are separated by 108 nucleotides
PFLU_RS04795 and PFLU_RS04800 are separated by 3 nucleotides
PFLU_RS04800 and PFLU_RS04805 are separated by 208 nucleotides
PFLU_RS04785: PFLU_RS04785 - ABC transporter substrate-binding protein, at 1,071,526 to 1,072,296
_RS04785
PFLU_RS04790: PFLU_RS04790 - YkgJ family cysteine cluster protein, at 1,072,331 to 1,073,074
_RS04790
PFLU_RS04795: PFLU_RS04795 - GNAT family N-acetyltransferase, at 1,073,183 to 1,073,665
_RS04795
PFLU_RS04800: PFLU_RS04800 - chemotaxis protein CheV, at 1,073,669 to 1,074,571
_RS04800
PFLU_RS04805: PFLU_RS04805 - D-glycerate dehydrogenase, at 1,074,780 to 1,075,754
_RS04805
Group
Condition
PFLU
_RS04785
PFLU
_RS04790
PFLU
_RS04795
PFLU
_RS04800
PFLU
_RS04805
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.1
-0.2
-0.0
-0.1
carbon source
acetate (C)
-0.4
+0.1
-0.2
-0.1
-0.1
carbon source
succinate (C)
-0.0
-0.2
-0.2
+0.1
-0.2
carbon source
D-Xylose (C)
-0.5
+0.2
-0.2
-0.1
+0.4
carbon source
acetate (C)
+0.0
+0.1
-0.2
-0.1
-0.1
carbon source
succinate (C)
+0.3
+0.0
-0.5
+0.1
-0.1
carbon source
succinate (C); with MOPS
-0.2
+0.0
-0.0
-0.2
+0.3
carbon source
D-Glucose (C); with MOPS
+0.2
-0.1
-0.1
-0.2
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.2
+0.1
-0.1
-0.1
-0.2
carbon source
acetate (C)
-0.2
+0.1
-0.0
-0.1
+0.2
carbon source
L-Arabinose (C)
-0.2
-0.2
+0.1
+0.1
+0.2
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.1
+0.1
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.3
+0.2
+0.2
-0.0
-0.0
carbon source
succinate (C); with MOPS
-0.2
+0.3
-0.0
+0.0
+0.0
carbon source
D-Xylose (C)
+0.1
+0.3
+0.0
-0.2
-0.1
carbon source
D,L-Lactate (C)
+0.0
+0.1
+0.2
-0.2
+0.1
carbon source
D-Glucose (C)
-0.0
+0.3
+0.2
-0.3
+0.0
carbon source
NAG (C)
+0.3
+0.1
-0.1
-0.2
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.1
+0.3
+0.1
-0.2
carbon source
NAG (C); with MOPS
-0.2
+0.2
-0.0
+0.1
+0.3
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.1
-0.2
+0.1
carbon source
D-Glucose (C)
+0.3
+0.3
+0.3
-0.1
-0.4
carbon source
L-Arabinose (C)
+0.4
+0.1
-0.3
+0.5
-0.2
carbon source
Trisodium citrate (C)
+0.5
+0.2
+0.0
+0.2
-0.3
carbon source
NAG (C); with MOPS
+0.1
+0.2
+0.1
-0.1
+0.3
carbon source
NAG (C); with MOPS
+0.3
+0.1
+0.3
-0.1
+0.2
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.0
+0.3
+0.2
+0.1
carbon source
acetate (C)
+0.6
-0.2
+0.3
+0.1
-0.1
carbon source
acetate (C)
+0.9
+0.3
+0.0
-0.3
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.3
+0.6
-0.1
-0.0
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