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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS03850 and PFLU_RS03855 are separated by 62 nucleotides
PFLU_RS03855 and PFLU_RS03860 overlap by 14 nucleotides
PFLU_RS03860 and PFLU_RS03865 are separated by 123 nucleotides
PFLU_RS03865 and PFLU_RS03870 are separated by 149 nucleotides
PFLU_RS03850: PFLU_RS03850 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 877,557 to 877,958
_RS03850
PFLU_RS03855: PFLU_RS03855 - glycine oxidase ThiO, at 878,021 to 879,130
_RS03855
PFLU_RS03860: PFLU_RS03860 - hypothetical protein, at 879,117 to 879,350
_RS03860
PFLU_RS03865: PFLU_RS03865 - outer membrane protein assembly factor BamD, at 879,474 to 880,499
_RS03865
PFLU_RS03870: PFLU_RS03870 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 880,649 to 881,611
_RS03870
Group
Condition
PFLU
_RS03850
PFLU
_RS03855
PFLU
_RS03860
PFLU
_RS03865
PFLU
_RS03870
carbon source
D-Glucose (C); with MOPS
-0.4
-0.2
+0.1
-0.9
-0.6
carbon source
NAG (C); with MOPS
-0.3
-0.2
-0.1
-0.8
-0.5
carbon source
L-Arabinose (C)
+0.4
-0.3
-0.3
-1.0
-0.6
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.2
-0.2
-0.9
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.3
-0.6
-0.2
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.1
-0.5
-0.6
-0.5
carbon source
Trisodium citrate (C)
-0.1
-0.1
-0.0
-0.7
-0.6
carbon source
acetate (C)
-0.4
-0.1
-0.7
-0.5
+0.3
carbon source
acetate (C)
-0.4
+0.1
-0.5
-0.9
+0.3
carbon source
D-Glucose (C)
-0.1
-0.2
-0.4
-0.4
-0.3
carbon source
Trisodium citrate (C)
+0.0
+0.0
-0.7
-0.5
-0.1
carbon source
NAG (C); with MOPS
+0.2
-0.2
-0.1
-0.5
-0.6
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.3
-0.2
-0.4
-0.2
carbon source
D-Glucose (C); with MOPS
-0.0
-0.1
-0.1
-0.3
-0.5
carbon source
Trisodium citrate (C); with MOPS
-0.2
+0.0
-0.3
-0.2
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.2
-0.4
+0.4
-0.7
carbon source
NAG (C); with MOPS
+0.1
+0.0
-0.2
-0.2
-0.5
carbon source
NAG (C)
-0.2
-0.1
+0.2
+0.1
-0.9
carbon source
L-Arabinose (C); with MOPS
+0.2
-0.2
-0.3
-0.2
-0.4
carbon source
D,L-Lactate (C)
-0.1
+0.1
-0.6
+0.1
-0.3
carbon source
Trisodium citrate (C)
-0.1
-0.0
-0.1
-0.6
+0.1
carbon source
acetate (C)
+0.0
-0.4
-0.1
-1.0
+0.7
carbon source
succinate (C); with MOPS
+0.0
+0.1
-0.3
-0.2
-0.3
carbon source
NAG (C)
+0.0
+0.1
+0.3
-0.1
-1.0
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.1
-0.4
-0.2
carbon source
D-Xylose (C)
+0.0
+0.0
-0.2
+0.2
-0.5
carbon source
succinate (C)
+0.1
+0.1
+0.1
-0.2
-0.4
carbon source
succinate (C); with MOPS
-0.2
+0.1
-0.3
-0.2
+0.4
carbon source
succinate (C); with MOPS
-0.3
+0.1
+0.0
-0.2
+0.3
carbon source
succinate (C)
+0.1
+0.1
-0.1
+0.2
-0.3
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