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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS03830 and PFLU_RS03835 are separated by 193 nucleotides
PFLU_RS03835 and PFLU_RS03840 overlap by 4 nucleotides
PFLU_RS03840 and PFLU_RS03845 are separated by 7 nucleotides
PFLU_RS03845 and PFLU_RS03850 are separated by 22 nucleotides
PFLU_RS03830: PFLU_RS03830 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 875,032 to 875,613
_RS03830
PFLU_RS03835: PFLU_RS03835 - type IV pilus modification protein PilV, at 875,807 to 876,292
_RS03835
PFLU_RS03840: PFLU_RS03840 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 876,289 to 876,996
_RS03840
PFLU_RS03845: PFLU_RS03845 - pilus assembly protein PilX, at 877,004 to 877,534
_RS03845
PFLU_RS03850: PFLU_RS03850 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 877,557 to 877,958
_RS03850
Group
Condition
PFLU
_RS03830
PFLU
_RS03835
PFLU
_RS03840
PFLU
_RS03845
PFLU
_RS03850
carbon source
NAG (C); with MOPS
-0.4
-0.5
-0.3
-0.2
+0.2
carbon source
NAG (C)
-0.3
-0.1
-0.3
-0.3
+0.0
carbon source
NAG (C)
-0.1
+0.2
-0.3
-0.5
-0.2
carbon source
acetate (C)
-0.7
+0.2
-0.3
+0.0
+0.0
carbon source
acetate (C)
+0.2
+0.2
-0.4
-0.3
-0.4
carbon source
D-Glucose (C); with MOPS
-0.3
+0.1
+0.3
-0.4
-0.3
carbon source
NAG (C); with MOPS
+0.1
+0.1
-0.1
-0.3
-0.3
carbon source
NAG (C); with MOPS
-0.4
-0.1
-0.0
+0.0
+0.1
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.1
-0.1
-0.2
+0.2
carbon source
succinate (C); with MOPS
-0.2
+0.3
+0.1
-0.2
-0.2
carbon source
D-Glucose (C)
-0.4
+0.0
+0.0
+0.0
+0.2
carbon source
D-Glucose (C); with MOPS
+0.7
-0.1
-0.1
-0.2
-0.4
carbon source
L-Arabinose (C)
-0.2
+0.2
+0.0
-0.3
+0.2
carbon source
Trisodium citrate (C)
-0.3
+0.1
-0.0
+0.3
+0.0
carbon source
acetate (C)
+0.5
-0.4
-0.2
+0.6
-0.4
carbon source
D-Glucose (C)
-0.1
+0.1
+0.1
+0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.1
+0.4
+0.3
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.2
+0.1
-0.1
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.2
+0.2
+0.1
+0.0
carbon source
acetate (C)
+0.1
+0.0
-0.3
+0.4
+0.1
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.1
+0.2
-0.1
carbon source
L-Arabinose (C)
-0.1
+0.4
-0.1
+0.1
+0.0
carbon source
D-Xylose (C)
+0.6
+0.1
-0.1
+0.1
-0.3
carbon source
D-Xylose (C)
+0.6
-0.2
-0.1
+0.1
+0.0
carbon source
D-Glucose (C); with MOPS
+0.6
-0.1
+0.1
+0.0
-0.0
carbon source
succinate (C)
+0.3
-0.0
+0.2
+0.1
+0.1
carbon source
acetate (C)
+0.5
+0.0
+0.1
+0.1
+0.1
carbon source
D-Glucose (C)
-0.1
+0.1
+0.2
+0.6
-0.1
carbon source
succinate (C)
+0.7
+0.0
+0.0
-0.0
+0.1
carbon source
L-Arabinose (C)
+0.5
-0.1
-0.0
+0.2
+0.4
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