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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS03435 and PFLU_RS03440 are separated by 71 nucleotides
PFLU_RS03440 and PFLU_RS03445 overlap by 4 nucleotides
PFLU_RS03445 and PFLU_RS03450 are separated by 41 nucleotides
PFLU_RS03450 and PFLU_RS03455 are separated by 260 nucleotides
PFLU_RS03435: PFLU_RS03435 - MFS transporter, at 790,945 to 792,249
_RS03435
PFLU_RS03440: PFLU_RS03440 - ImmA/IrrE family metallo-endopeptidase, at 792,321 to 793,457
_RS03440
PFLU_RS03445: PFLU_RS03445 - DUF4411 family protein, at 793,454 to 793,951
_RS03445
PFLU_RS03450: PFLU_RS03450 - gluconate transporter, at 793,993 to 795,363
_RS03450
PFLU_RS03455: PFLU_RS03455 - cation transporter, at 795,624 to 796,529
_RS03455
Group
Condition
PFLU
_RS03435
PFLU
_RS03440
PFLU
_RS03445
PFLU
_RS03450
PFLU
_RS03455
carbon source
L-Arabinose (C); with MOPS
-1.0
-0.1
+0.2
-0.4
-0.1
carbon source
NAG (C); with MOPS
-0.9
+0.0
-0.1
-0.3
+0.1
carbon source
D-Glucose (C)
-0.5
-0.1
+0.1
-0.3
-0.1
carbon source
Trisodium citrate (C)
-0.8
-0.1
-0.0
-0.1
-0.0
carbon source
Trisodium citrate (C)
-0.5
-0.1
+0.1
-0.2
-0.3
carbon source
Trisodium citrate (C); with MOPS
-0.5
-0.2
+0.2
-0.4
+0.1
carbon source
NAG (C); with MOPS
-0.8
+0.1
+0.1
-0.3
+0.2
carbon source
acetate (C)
-1.0
-0.1
+0.2
+0.4
-0.1
carbon source
succinate (C); with MOPS
-0.3
-0.1
+0.2
-0.3
-0.1
carbon source
L-Arabinose (C)
-0.3
+0.0
-0.1
-0.3
+0.1
carbon source
acetate (C)
-0.6
-0.3
+0.1
+0.4
-0.2
carbon source
L-Arabinose (C); with MOPS
-0.8
+0.2
+0.1
-0.0
-0.0
carbon source
L-Arabinose (C)
+0.0
-0.1
+0.0
-0.3
-0.1
carbon source
succinate (C)
-0.4
+0.1
+0.1
-0.3
+0.0
carbon source
NAG (C)
-0.3
-0.0
+0.1
-0.2
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.6
-0.1
+0.2
+0.2
-0.1
carbon source
succinate (C); with MOPS
-0.5
+0.1
+0.1
-0.0
-0.1
carbon source
L-Arabinose (C)
-0.0
-0.0
+0.1
-0.3
-0.1
carbon source
D-Glucose (C); with MOPS
-0.5
-0.0
+0.2
-0.2
+0.1
carbon source
D-Glucose (C); with MOPS
-0.4
-0.1
+0.1
-0.2
+0.2
carbon source
succinate (C)
-0.3
+0.2
+0.0
-0.0
-0.2
carbon source
Trisodium citrate (C)
-0.5
-0.0
+0.1
-0.1
+0.2
carbon source
NAG (C); with MOPS
-0.8
+0.1
+0.3
+0.2
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.4
+0.1
+0.2
+0.1
-0.2
carbon source
NAG (C)
-0.4
+0.1
-0.0
-0.0
+0.1
carbon source
D-Glucose (C)
-0.2
-0.0
-0.1
+0.0
+0.1
carbon source
acetate (C)
-0.7
+0.2
+0.1
+0.0
+0.3
carbon source
D-Glucose (C)
-0.4
-0.2
+0.2
+0.1
+0.2
carbon source
D-Glucose (C); with MOPS
-0.2
+0.1
-0.0
-0.1
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.3
-0.1
+0.1
+0.1
+0.2
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