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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS03125 and PFLU_RS03130 are separated by 258 nucleotides
PFLU_RS03130 and PFLU_RS03135 overlap by 16 nucleotides
PFLU_RS03135 and PFLU_RS03140 overlap by 4 nucleotides
PFLU_RS03140 and PFLU_RS03145 are separated by 72 nucleotides
PFLU_RS03125: PFLU_RS03125 - DUF4136 domain-containing protein, at 723,741 to 724,298
_RS03125
PFLU_RS03130: PFLU_RS03130 - hypothetical protein, at 724,557 to 726,467
_RS03130
PFLU_RS03135: PFLU_RS03135 - PAS domain-containing sensor histidine kinase, at 726,452 to 729,190
_RS03135
PFLU_RS03140: PFLU_RS03140 - pilus assembly protein, at 729,187 to 729,630
_RS03140
PFLU_RS03145: PFLU_RS03145 - peptidase A24, at 729,703 to 730,152
_RS03145
Group
Condition
PFLU
_RS03125
PFLU
_RS03130
PFLU
_RS03135
PFLU
_RS03140
PFLU
_RS03145
carbon source
acetate (C)
+0.3
-0.2
-0.1
+0.3
-1.6
carbon source
D-Glucose (C); with MOPS
-0.3
+0.0
-0.0
-0.1
-0.6
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.1
+0.0
-0.9
carbon source
Trisodium citrate (C)
-0.0
+0.0
-0.1
-0.0
-0.5
carbon source
succinate (C); with MOPS
+0.1
+0.1
-0.1
-0.0
-0.6
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.1
-0.1
-0.3
-0.2
carbon source
succinate (C); with MOPS
+0.1
+0.1
-0.0
-0.1
-0.5
carbon source
D-Glucose (C); with MOPS
-0.2
+0.0
-0.0
+0.1
-0.4
carbon source
succinate (C); with MOPS
+0.1
+0.2
+0.1
-0.1
-0.7
carbon source
acetate (C)
+0.2
+0.2
-0.1
-0.4
-0.1
carbon source
succinate (C)
-0.1
-0.0
+0.2
-0.1
-0.3
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.0
+0.1
-0.1
-0.3
carbon source
L-Arabinose (C)
+0.3
-0.1
-0.2
-0.4
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
-0.1
+0.0
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.4
+0.2
+0.1
+0.1
-1.0
carbon source
D-Glucose (C)
+0.0
+0.1
+0.1
+0.0
-0.3
carbon source
D,L-Lactate (C)
-0.2
+0.1
-0.0
+0.1
+0.1
carbon source
D,L-Lactate (C)
-0.0
-0.0
-0.1
-0.1
+0.3
carbon source
succinate (C)
+0.2
+0.2
-0.1
+0.1
-0.2
carbon source
D-Glucose (C); with MOPS
+0.2
+0.1
+0.1
+0.1
-0.4
carbon source
acetate (C)
+0.6
+0.2
-0.1
-0.0
-0.5
carbon source
NAG (C); with MOPS
+0.2
+0.2
+0.0
+0.5
-0.7
carbon source
acetate (C)
-0.1
+0.1
+0.1
+0.1
+0.1
carbon source
NAG (C); with MOPS
+0.2
+0.1
-0.0
-0.1
+0.1
carbon source
Trisodium citrate (C)
-0.0
+0.2
+0.1
-0.1
+0.3
carbon source
D-Glucose (C)
+0.2
-0.0
-0.1
+0.0
+0.4
carbon source
NAG (C)
+0.2
+0.1
-0.0
+0.2
+0.1
carbon source
L-Arabinose (C)
+0.2
+0.2
-0.0
+0.3
+0.2
carbon source
NAG (C)
+0.1
+0.0
+0.0
+0.2
+0.5
carbon source
NAG (C); with MOPS
-0.0
+0.2
+0.0
+0.2
+0.8
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