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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS02430 and PFLU_RS02435 are separated by 162 nucleotides
PFLU_RS02435 and PFLU_RS02440 overlap by 32 nucleotides
PFLU_RS02440 and PFLU_RS02445 are separated by 193 nucleotides
PFLU_RS02445 and PFLU_RS02450 overlap by 10 nucleotides
PFLU_RS02430: PFLU_RS02430 - phosphomethylpyrimidine synthase ThiC, at 558,161 to 560,065
_RS02430
PFLU_RS02435: PFLU_RS02435 - putative hydroxymethylpyrimidine transporter CytX, at 560,228 to 561,517
_RS02435
PFLU_RS02440: PFLU_RS02440 - DUF3298 domain-containing protein, at 561,486 to 562,232
_RS02440
PFLU_RS02445: PFLU_RS02445 - NUDIX domain-containing protein, at 562,426 to 563,043
_RS02445
PFLU_RS02450: PFLU_RS02450 - DUF1249 domain-containing protein, at 563,034 to 563,483
_RS02450
Group
Condition
PFLU
_RS02430
PFLU
_RS02435
PFLU
_RS02440
PFLU
_RS02445
PFLU
_RS02450
carbon source
acetate (C)
-1.9
-0.2
-0.1
+0.0
-0.1
carbon source
acetate (C)
-1.3
+0.1
-0.3
+0.1
-0.1
carbon source
L-Arabinose (C); with MOPS
-1.1
+0.0
-0.3
-0.0
-0.2
carbon source
L-Arabinose (C)
-1.0
+0.0
+0.0
+0.2
-0.6
carbon source
NAG (C); with MOPS
-0.6
+0.4
-0.2
-0.4
-0.5
carbon source
L-Arabinose (C)
-1.2
+0.3
-0.2
+0.1
-0.2
carbon source
NAG (C); with MOPS
-0.4
-0.0
-0.2
-0.6
+0.0
carbon source
L-Arabinose (C)
-0.8
+0.3
-0.3
-0.2
-0.2
carbon source
L-Arabinose (C); with MOPS
-0.8
-0.3
-0.2
-0.1
+0.3
carbon source
L-Arabinose (C); with MOPS
-0.9
+0.5
-0.3
-0.1
-0.1
carbon source
D-Glucose (C); with MOPS
-0.9
+0.3
-0.2
-0.1
-0.0
carbon source
D-Glucose (C); with MOPS
-0.3
-0.3
-0.2
+0.0
-0.1
carbon source
NAG (C); with MOPS
-0.6
+0.5
-0.2
-0.0
-0.3
carbon source
Trisodium citrate (C)
-0.3
-0.1
-0.1
-0.1
+0.1
carbon source
D-Glucose (C)
-0.3
+0.1
-0.2
+0.1
-0.1
carbon source
D-Glucose (C)
-0.2
+0.3
-0.1
-0.1
-0.2
carbon source
Trisodium citrate (C); with MOPS
-0.7
+0.4
-0.2
-0.1
+0.2
carbon source
succinate (C)
-0.3
-0.0
-0.1
-0.1
+0.2
carbon source
D-Glucose (C); with MOPS
-0.3
+0.2
-0.1
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.6
+0.7
-0.1
-0.2
+0.0
carbon source
D-Xylose (C)
+0.0
-0.2
+0.2
+0.1
-0.3
carbon source
acetate (C)
-0.6
+0.5
-0.3
+0.2
+0.2
carbon source
acetate (C)
-0.1
+0.4
+0.0
-0.2
-0.2
carbon source
succinate (C); with MOPS
-0.2
+0.1
-0.2
+0.0
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.4
+0.4
-0.1
+0.1
+0.0
carbon source
Trisodium citrate (C)
-0.3
+0.3
-0.1
+0.1
+0.2
carbon source
Trisodium citrate (C)
-0.2
+0.4
-0.2
+0.2
+0.0
carbon source
D,L-Lactate (C)
+0.0
+0.3
-0.1
-0.1
+0.1
carbon source
D-Xylose (C)
+0.3
+0.3
+0.1
-0.0
-0.3
carbon source
acetate (C)
+0.2
+0.1
+0.1
+0.1
-0.1
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