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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS02300 and PFLU_RS02305 overlap by 1 nucleotides
PFLU_RS02305 and PFLU_RS02310 overlap by 4 nucleotides
PFLU_RS02310 and PFLU_RS02315 overlap by 1 nucleotides
PFLU_RS02315 and PFLU_RS02320 are separated by 386 nucleotides
PFLU_RS02300: PFLU_RS02300 - lipopolysaccharide core heptose(I) kinase RfaP, at 526,461 to 527,267
_RS02300
PFLU_RS02305: PFLU_RS02305 - LPS biosynthesis protein, at 527,267 to 528,001
_RS02305
PFLU_RS02310: PFLU_RS02310 - LPS kinase, at 527,998 to 528,750
_RS02310
PFLU_RS02315: PFLU_RS02315 - serine/threonine protein kinase, at 528,750 to 530,201
_RS02315
PFLU_RS02320: PFLU_RS02320 - sugar ABC transporter substrate-binding protein, at 530,588 to 531,568
_RS02320
Group
Condition
PFLU
_RS02300
PFLU
_RS02305
PFLU
_RS02310
PFLU
_RS02315
PFLU
_RS02320
carbon source
acetate (C)
N.D.
N.D.
-3.3
N.D.
-0.2
carbon source
acetate (C)
N.D.
N.D.
-2.7
N.D.
+0.1
carbon source
L-Arabinose (C)
N.D.
N.D.
-1.8
N.D.
+0.1
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-1.5
N.D.
-0.1
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-1.4
N.D.
-0.1
carbon source
NAG (C); with MOPS
N.D.
N.D.
-1.0
N.D.
-0.3
carbon source
L-Arabinose (C)
N.D.
N.D.
-1.0
N.D.
-0.3
carbon source
D-Glucose (C); with MOPS
N.D.
N.D.
-1.5
N.D.
+0.2
carbon source
acetate (C)
N.D.
N.D.
-1.5
N.D.
+0.3
carbon source
D-Glucose (C)
N.D.
N.D.
-1.1
N.D.
-0.0
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.7
N.D.
-0.3
carbon source
Trisodium citrate (C)
N.D.
N.D.
-1.0
N.D.
-0.0
carbon source
Trisodium citrate (C); with MOPS
N.D.
N.D.
-0.6
N.D.
-0.4
carbon source
Trisodium citrate (C)
N.D.
N.D.
-1.0
N.D.
+0.1
carbon source
D-Glucose (C)
N.D.
N.D.
-1.1
N.D.
+0.3
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-0.9
N.D.
+0.1
carbon source
NAG (C); with MOPS
N.D.
N.D.
-1.2
N.D.
+0.4
carbon source
Trisodium citrate (C); with MOPS
N.D.
N.D.
-0.8
N.D.
+0.0
carbon source
D-Glucose (C)
N.D.
N.D.
-0.7
N.D.
+0.0
carbon source
D-Glucose (C); with MOPS
N.D.
N.D.
-0.7
N.D.
+0.1
carbon source
succinate (C)
N.D.
N.D.
-0.4
N.D.
-0.1
carbon source
succinate (C); with MOPS
N.D.
N.D.
-0.6
N.D.
+0.1
carbon source
D-Glucose (C); with MOPS
N.D.
N.D.
-0.5
N.D.
+0.1
carbon source
Trisodium citrate (C); with MOPS
N.D.
N.D.
-0.4
N.D.
-0.0
carbon source
Trisodium citrate (C)
N.D.
N.D.
-0.0
N.D.
-0.4
carbon source
acetate (C)
N.D.
N.D.
-0.3
N.D.
+0.0
carbon source
succinate (C)
N.D.
N.D.
-0.4
N.D.
+0.0
carbon source
succinate (C); with MOPS
N.D.
N.D.
-0.5
N.D.
+0.2
carbon source
acetate (C)
N.D.
N.D.
-0.2
N.D.
+0.1
carbon source
D,L-Lactate (C)
N.D.
N.D.
-0.2
N.D.
+0.3
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