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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS01395 and PFLU_RS01400 are separated by 26 nucleotides
PFLU_RS01400 and PFLU_RS01405 overlap by 4 nucleotides
PFLU_RS01405 and PFLU_RS01410 are separated by 36 nucleotides
PFLU_RS01410 and PFLU_RS01415 overlap by 4 nucleotides
PFLU_RS01395: PFLU_RS01395 - thioesterase, at 309,357 to 309,812
_RS01395
PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215
_RS01400
PFLU_RS01405: PFLU_RS01405 - sensor histidine kinase, at 311,212 to 313,020
_RS01405
PFLU_RS01410: PFLU_RS01410 - dTDP-4-dehydrorhamnose reductase, at 313,057 to 313,926
_RS01410
PFLU_RS01415: PFLU_RS01415 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 313,923 to 314,468
_RS01415
Group
Condition
PFLU
_RS01395
PFLU
_RS01400
PFLU
_RS01405
PFLU
_RS01410
PFLU
_RS01415
carbon source
succinate (C); with MOPS
-0.0
-4.3
-1.9
N.D.
N.D.
carbon source
succinate (C)
+0.1
-4.8
-1.3
N.D.
N.D.
carbon source
succinate (C); with MOPS
-0.2
-4.8
-0.9
N.D.
N.D.
carbon source
succinate (C); with MOPS
-0.0
-4.6
-1.1
N.D.
N.D.
carbon source
succinate (C)
+0.1
-4.7
-0.9
N.D.
N.D.
carbon source
succinate (C)
+0.1
-4.5
-0.6
N.D.
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.4
-0.2
+0.1
N.D.
N.D.
carbon source
D-Glucose (C)
+0.0
-0.2
-0.2
N.D.
N.D.
carbon source
NAG (C)
+0.1
-0.1
-0.3
N.D.
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.4
-0.1
+0.3
N.D.
N.D.
carbon source
D-Xylose (C)
-0.2
-0.1
+0.1
N.D.
N.D.
carbon source
L-Arabinose (C)
-0.4
-0.1
+0.5
N.D.
N.D.
carbon source
NAG (C); with MOPS
-0.3
+0.1
+0.2
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.2
-0.2
+0.4
N.D.
N.D.
carbon source
acetate (C)
-0.2
+0.0
+0.2
N.D.
N.D.
carbon source
NAG (C); with MOPS
+0.2
-0.1
+0.0
N.D.
N.D.
carbon source
D-Glucose (C); with MOPS
+0.3
+0.1
-0.3
N.D.
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.2
+0.4
N.D.
N.D.
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.2
N.D.
N.D.
carbon source
D-Glucose (C); with MOPS
+0.1
-0.1
+0.3
N.D.
N.D.
carbon source
D-Glucose (C)
-0.1
+0.2
+0.3
N.D.
N.D.
carbon source
D-Glucose (C)
+0.2
+0.2
-0.1
N.D.
N.D.
carbon source
L-Arabinose (C); with MOPS
+0.3
-0.1
+0.3
N.D.
N.D.
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.1
+0.5
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.2
+0.7
N.D.
N.D.
carbon source
L-Arabinose (C)
-0.0
+0.1
+0.6
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.2
-0.2
+0.6
N.D.
N.D.
carbon source
acetate (C)
-0.5
-0.6
+1.9
N.D.
N.D.
carbon source
acetate (C)
+0.0
-0.4
+2.0
N.D.
N.D.
carbon source
acetate (C)
+0.3
-0.9
+2.4
N.D.
N.D.
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