Private Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS00605 and PFLU_RS00610 are separated by 39 nucleotides
PFLU_RS00610 and PFLU_RS00615 are separated by 19 nucleotides
PFLU_RS00615 and PFLU_RS00620 overlap by 4 nucleotides
PFLU_RS00620 and PFLU_RS00625 overlap by 14 nucleotides
PFLU_RS00605: PFLU_RS00605 - methyl-accepting chemotaxis protein, at 125,625 to 127,505
_RS00605
PFLU_RS00610: PFLU_RS00610 - SRPBCC family protein, at 127,545 to 128,003
_RS00610
PFLU_RS00615: PFLU_RS00615 - non-ribosomal peptide synthetase, at 128,023 to 131,394
_RS00615
PFLU_RS00620: PFLU_RS00620 - hypothetical protein, at 131,391 to 132,338
_RS00620
PFLU_RS00625: PFLU_RS00625 - DUF3050 domain-containing protein, at 132,325 to 133,092
_RS00625
Group
Condition
PFLU
_RS00605
PFLU
_RS00610
PFLU
_RS00615
PFLU
_RS00620
PFLU
_RS00625
carbon source
acetate (C)
+0.0
-0.2
-0.2
-0.2
+0.0
carbon source
D-Glucose (C); with MOPS
+0.0
+0.1
-0.2
-0.2
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.2
-0.3
+0.1
-0.2
-0.2
carbon source
Trisodium citrate (C)
-0.0
-0.3
-0.0
-0.1
+0.0
carbon source
acetate (C)
-0.0
-0.1
-0.2
-0.0
-0.0
carbon source
succinate (C); with MOPS
-0.1
+0.0
-0.1
-0.1
-0.1
carbon source
acetate (C)
+0.0
+0.0
-0.0
-0.0
-0.2
carbon source
D-Xylose (C)
-0.1
+0.1
+0.0
-0.2
+0.1
carbon source
acetate (C)
-0.2
-0.1
+0.2
-0.1
+0.1
carbon source
succinate (C); with MOPS
-0.0
-0.1
-0.1
+0.0
+0.1
carbon source
NAG (C)
+0.0
-0.2
+0.0
+0.0
+0.0
carbon source
NAG (C); with MOPS
+0.2
-0.2
-0.0
-0.0
-0.0
carbon source
L-Arabinose (C)
-0.0
-0.2
+0.1
-0.2
+0.4
carbon source
L-Arabinose (C)
-0.0
-0.2
-0.0
+0.0
+0.2
carbon source
D-Glucose (C)
-0.1
-0.2
+0.0
+0.0
+0.2
carbon source
succinate (C)
+0.0
-0.0
-0.0
-0.1
+0.2
carbon source
succinate (C)
-0.0
+0.1
-0.0
-0.4
+0.3
carbon source
D,L-Lactate (C)
+0.1
-0.1
-0.0
+0.1
+0.0
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
-0.2
+0.0
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.1
-0.1
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.1
-0.2
+0.3
+0.2
carbon source
NAG (C); with MOPS
+0.0
-0.3
-0.1
-0.0
+0.4
carbon source
D-Glucose (C); with MOPS
+0.1
-0.1
-0.1
+0.3
+0.1
carbon source
L-Arabinose (C)
-0.0
-0.3
+0.0
+0.2
+0.3
carbon source
succinate (C)
+0.1
+0.2
-0.1
+0.1
+0.0
carbon source
Trisodium citrate (C)
-0.0
+0.2
+0.0
+0.1
-0.0
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.1
-0.1
-0.1
+0.3
carbon source
NAG (C); with MOPS
+0.0
-0.1
-0.0
+0.1
+0.3
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.0
+0.1
+0.1
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.2
-0.1
+0.1
+0.4
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