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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS00360 and PFLU_RS00365 are separated by 37 nucleotides
PFLU_RS00365 and PFLU_RS00370 overlap by 8 nucleotides
PFLU_RS00370 and PFLU_RS00375 overlap by 1 nucleotides
PFLU_RS00375 and PFLU_RS00380 are separated by 58 nucleotides
PFLU_RS00360: PFLU_RS00360 - hypothetical protein, at 72,871 to 73,590
_RS00360
PFLU_RS00365: PFLU_RS00365 - zinc ABC transporter permease subunit ZnuB, at 73,628 to 74,416
_RS00365
PFLU_RS00370: PFLU_RS00370 - zinc ABC transporter ATP-binding protein ZnuC, at 74,409 to 75,194
_RS00370
PFLU_RS00375: PFLU_RS00375 - transcriptional repressor, at 75,194 to 75,676
_RS00375
PFLU_RS00380: PFLU_RS00380 - zinc ABC transporter substrate-binding protein ZnuA, at 75,735 to 76,664
_RS00380
Group
Condition
PFLU
_RS00360
PFLU
_RS00365
PFLU
_RS00370
PFLU
_RS00375
PFLU
_RS00380
carbon source
NAG (C)
-0.2
-0.3
-0.4
-1.8
-0.5
carbon source
NAG (C)
-0.1
-0.3
-0.3
-2.0
-0.5
carbon source
L-Arabinose (C); with MOPS
+0.8
-0.6
-0.2
-2.5
-0.5
carbon source
L-Arabinose (C)
+1.0
+0.0
-0.5
-2.9
-0.0
carbon source
L-Arabinose (C)
+0.9
-0.2
-0.0
-2.8
-0.1
carbon source
acetate (C)
+0.6
+0.1
+0.4
-2.8
-0.0
carbon source
D-Glucose (C)
+0.3
-0.0
+0.0
-1.4
-0.2
carbon source
NAG (C); with MOPS
+0.6
+0.4
+0.4
-2.8
+0.1
carbon source
Trisodium citrate (C)
+0.6
+0.1
+0.0
-1.5
+0.0
carbon source
Trisodium citrate (C)
+0.3
-0.3
-0.1
-0.5
+0.1
carbon source
D-Xylose (C)
+0.2
+0.2
-0.1
-0.4
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.3
-0.3
-0.3
+0.8
-0.4
carbon source
D-Glucose (C); with MOPS
+0.4
-0.2
-0.1
+0.4
-0.3
carbon source
acetate (C)
-0.2
-0.2
+0.0
+0.8
-0.1
carbon source
succinate (C); with MOPS
+0.4
+0.0
+0.1
-0.5
+0.2
carbon source
L-Arabinose (C)
+1.1
-0.5
-0.1
+0.0
-0.1
carbon source
acetate (C)
+0.8
-0.1
+0.3
-0.4
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.6
-0.2
+0.1
+0.5
-0.3
carbon source
D-Glucose (C)
+0.6
-0.5
-0.0
+1.1
-0.1
carbon source
succinate (C)
+0.2
-0.0
-0.1
+0.9
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.6
+0.0
+0.2
+0.4
+0.1
carbon source
NAG (C); with MOPS
+0.5
+0.1
+0.2
+0.6
-0.1
carbon source
succinate (C); with MOPS
+0.3
+0.3
+0.2
+0.4
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.3
+0.0
-0.0
+1.1
-0.0
carbon source
acetate (C)
+1.1
-0.4
-0.1
+0.7
+0.2
carbon source
Trisodium citrate (C); with MOPS
+0.5
+0.4
-0.1
+0.9
-0.0
carbon source
Trisodium citrate (C)
+0.6
+0.0
-0.1
+1.2
+0.0
carbon source
D-Glucose (C); with MOPS
+0.6
+0.1
-0.1
+1.3
-0.2
carbon source
D-Glucose (C); with MOPS
+0.6
-0.0
-0.1
+1.4
+0.0
carbon source
NAG (C); with MOPS
+0.5
+0.1
+0.2
+1.8
-0.0
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