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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
OKGIIK_11980 and OKGIIK_11985 are separated by 80 nucleotides
OKGIIK_11985 and acrB are separated by 30 nucleotides
acrB and OKGIIK_11995 overlap by 4 nucleotides
OKGIIK_11995 and marR are separated by 131 nucleotides
OKGIIK_11980: OKGIIK_11980 - IS3 family transposase, at 2,579,022 to 2,579,918
_11980
OKGIIK_11985: OKGIIK_11985 - hypothetical protein, at 2,579,999 to 2,580,391
_11985
OKGIIK_11990: acrB - acriflavine resistance protein B, at 2,580,422 to 2,583,556
acrB
OKGIIK_11995: OKGIIK_11995 - efflux RND transporter periplasmic adaptor subunit, at 2,583,553 to 2,584,767
_11995
OKGIIK_12000: marR - MarR family transcriptional regulator, at 2,584,899 to 2,585,354
marR
Group
Condition
OKGIIK
_11980
OKGIIK
_11985
OKGIIK
_11990
OKGIIK
_11995
OKGIIK
_12000
acrB
marR
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
N.D.
-0.5
+0.1
+0.3
-0.3
stress
R2A_PIPES with Cadmium chloride 128 uM
N.D.
-0.4
+0.2
+0.4
-0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
N.D.
+0.1
+0.1
+0.3
-0.5
no stress control
no stress control
N.D.
+0.2
+0.2
+0.2
-0.5
no stress control
no stress control
N.D.
-0.2
+0.2
+0.2
-0.2
stress
R2A_PIPES with Cobalt chloride 512 uM
N.D.
-0.1
+0.3
+0.3
-0.5
no stress control
no stress control
N.D.
+0.2
+0.0
+0.4
-0.6
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
N.D.
+0.1
+0.2
+0.5
-0.6
no stress control
no stress control
N.D.
+0.1
+0.2
+0.4
-0.5
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
N.D.
-0.1
+0.2
+0.8
-0.6
stress
R2A_PIPES with Nickel (II) chloride 424 uM
N.D.
+0.1
-0.0
+0.5
-0.2
no stress control
no stress control
N.D.
+0.3
+0.2
+0.1
-0.2
no stress control
no stress control
N.D.
+0.3
-0.0
+0.2
-0.2
no stress control
no stress control
N.D.
-0.2
+0.2
+0.1
+0.3
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
N.D.
+0.5
+0.1
+0.2
-0.2
stress
R2A_PIPES with Cobalt chloride 512 uM
N.D.
+0.3
+0.2
+0.2
-0.2
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
N.D.
-0.3
+0.2
+0.4
+0.2
no stress control
no stress control
N.D.
+0.2
+0.2
+0.5
-0.2
no stress control
no stress control
N.D.
+0.7
-0.0
+0.5
-0.4
stress
R2A_PIPES with Cobalt chloride 1024 uM
N.D.
+0.1
+0.4
+0.6
-0.2
stress
R2A_PIPES with Cobalt chloride 1024 uM
N.D.
+0.3
+0.5
+0.8
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
-0.1
+0.9
+1.0
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
-0.0
+0.9
+1.1
-0.5
pH
R2A_PIPES pH 4.5
N.D.
-0.4
+1.5
+1.7
-0.2
pH
R2A_PIPES pH 4.25
N.D.
-0.2
+1.4
+1.5
+0.0
pH
R2A_PIPES pH 4.25
N.D.
-0.2
+1.4
+1.5
+0.1
pH
R2A_PIPES pH 4.5
N.D.
+0.2
+1.6
+2.0
-0.6
pH
R2A_PIPES pH 4
N.D.
+0.1
+1.3
+1.6
+0.8
pH
R2A_PIPES pH 4
N.D.
-0.1
+1.6
+1.7
+0.9
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