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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
mraZ and rsmI are separated by 780 nucleotides
rsmI and OKGIIK_11740 are separated by 81 nucleotides
OKGIIK_11740 and yraN overlap by 1 nucleotides
yraN and OKGIIK_11750 are separated by 27 nucleotides
OKGIIK_11725: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 2,524,001 to 2,524,447
mraZ
OKGIIK_11735: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 2,525,228 to 2,526,064
rsmI
OKGIIK_11740: OKGIIK_11740 - LppC putative lipoprotein, at 2,526,146 to 2,528,068
_11740
OKGIIK_11745: yraN - YraN family protein, at 2,528,068 to 2,528,424
yraN
OKGIIK_11750: OKGIIK_11750 - Dimethylmenaquinone methyltransferase, at 2,528,452 to 2,529,825
_11750
Group
Condition
OKGIIK
_11725
OKGIIK
_11735
OKGIIK
_11740
OKGIIK
_11745
OKGIIK
_11750
mraZ
rsmI
yraN
no stress control
no stress control
-0.3
-1.4
-1.2
+0.1
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.5
-1.5
-0.0
-1.0
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.4
-1.2
-1.4
+0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.3
-1.4
+0.0
-0.8
pH
R2A_PIPES pH 4
-0.9
-1.1
-0.9
+0.1
+0.3
stress
R2A_PIPES with Cadmium chloride 128 uM
-0.8
-0.3
-0.6
-0.2
-0.4
no stress control
no stress control
-0.1
-1.5
-0.7
-0.0
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.7
-1.4
+0.2
-0.1
no stress control
no stress control
-1.0
-0.4
-0.7
+0.1
+0.0
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.4
-0.5
-0.8
+0.1
-0.4
no stress control
no stress control
-0.3
-1.2
-0.7
+0.1
+0.1
pH
R2A_PIPES pH 4
-0.5
-0.8
-0.6
+0.2
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.4
-1.5
+0.3
+0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.9
-0.0
-0.9
-0.1
+0.1
no stress control
no stress control
-0.5
-0.6
-0.9
+0.1
+0.3
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.3
-0.2
-1.2
-0.0
-0.5
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
-0.2
-0.9
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
+0.2
-0.0
-0.9
+0.0
-0.7
stress
R2A_PIPES with Cobalt chloride 512 uM
+0.1
-0.5
-0.8
-0.1
-0.0
no stress control
no stress control
-0.5
-0.5
-0.6
+0.3
-0.1
no stress control
no stress control
-0.6
-0.1
-0.7
+0.2
+0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.1
-0.2
-0.7
-0.1
+0.2
no stress control
no stress control
-0.3
+0.1
-0.7
-0.2
+0.4
pH
R2A_PIPES pH 4.25
-0.0
-0.5
-0.4
+0.1
+0.3
pH
R2A_PIPES pH 4.5
-0.2
-0.5
-0.1
-0.0
+0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.2
+0.2
-1.0
+0.1
+0.4
no stress control
no stress control
-0.2
+1.1
-1.0
+0.4
-0.2
pH
R2A_PIPES pH 4.25
+0.1
+0.1
-0.6
+0.3
+0.2
pH
R2A_PIPES pH 4.5
+0.2
-0.1
-0.0
+0.2
+0.1
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