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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
OKGIIK_10815 and pilB are separated by 523 nucleotides
pilB and pulF are separated by 142 nucleotides
pulF and pulO are separated by 161 nucleotides
pulO and coaE overlap by 4 nucleotides
OKGIIK_10815: OKGIIK_10815 - SpoVT-AbrB domain-containing protein, at 2,317,342 to 2,317,689
_10815
OKGIIK_10820: pilB - type IV-A pilus assembly ATPase PilB, at 2,318,213 to 2,319,865
pilB
OKGIIK_10825: pulF - Type II secretory pathway, component PulF, at 2,320,008 to 2,321,282
pulF
OKGIIK_10830: pulO - prepilin peptidase, at 2,321,444 to 2,322,301
pulO
OKGIIK_10835: coaE - dephospho-CoA kinase, at 2,322,298 to 2,322,921
coaE
Group
Condition
OKGIIK
_10815
OKGIIK
_10820
OKGIIK
_10825
OKGIIK
_10830
OKGIIK
_10835
pilB
pulF
pulO
coaE
no stress control
no stress control
-0.3
+0.0
+0.2
-1.2
N.D.
no stress control
no stress control
-0.2
+0.1
-0.0
-0.9
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.0
-0.1
-1.0
N.D.
no stress control
no stress control
-0.5
+0.0
-0.2
-0.4
N.D.
no stress control
no stress control
+0.0
-0.1
-0.3
-0.6
N.D.
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.1
-0.0
-0.3
-0.6
N.D.
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
+0.1
-0.0
-0.5
N.D.
no stress control
no stress control
-0.2
-0.1
+0.2
-0.6
N.D.
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.3
-0.0
+0.2
-0.5
N.D.
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.2
+0.1
+0.1
-0.6
N.D.
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.5
+0.3
+0.2
-0.6
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.1
+0.2
-0.6
N.D.
stress
R2A_PIPES with Cadmium chloride 128 uM
-0.2
+0.1
-0.2
-0.3
N.D.
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.1
+0.1
-0.8
N.D.
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.3
+0.2
+0.2
-0.6
N.D.
no stress control
no stress control
+0.1
-0.1
-0.2
-0.4
N.D.
pH
R2A_PIPES pH 4.25
-0.4
+0.1
-0.2
-0.0
N.D.
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.2
+0.1
+0.1
-0.5
N.D.
no stress control
no stress control
-0.1
+0.1
+0.1
-0.5
N.D.
pH
R2A_PIPES pH 4.5
-0.2
+0.0
+0.1
-0.2
N.D.
pH
R2A_PIPES pH 4.25
-0.2
+0.2
-0.1
-0.3
N.D.
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
+0.2
+0.1
-0.2
N.D.
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.0
+0.1
+0.1
-0.3
N.D.
no stress control
no stress control
-0.0
+0.1
+0.1
-0.3
N.D.
no stress control
no stress control
-0.1
+0.1
+0.0
-0.1
N.D.
pH
R2A_PIPES pH 4
-0.2
+0.1
-0.0
+0.1
N.D.
pH
R2A_PIPES pH 4.5
+0.1
+0.1
+0.1
-0.1
N.D.
pH
R2A_PIPES pH 4
-0.3
+0.2
+0.2
+0.1
N.D.
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.3
+0.1
-0.1
N.D.
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