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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
tgt and queA are separated by 129 nucleotides
queA and citB are separated by 33 nucleotides
citB and comP are separated by 75 nucleotides
comP and OKGIIK_10020 are separated by 44 nucleotides
OKGIIK_10000: tgt - tRNA guanosine(34) transglycosylase Tgt, at 2,158,894 to 2,160,036
tgt
OKGIIK_10005: queA - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 2,160,166 to 2,161,230
queA
OKGIIK_10010: citB - DNA-binding response regulator, at 2,161,264 to 2,161,866
citB
OKGIIK_10015: comP - two-component sensor histidine kinase, at 2,161,942 to 2,163,171
comP
OKGIIK_10020: OKGIIK_10020 - Transport permease protein, at 2,163,216 to 2,164,004
_10020
Group
Condition
OKGIIK
_10000
OKGIIK
_10005
OKGIIK
_10010
OKGIIK
_10015
OKGIIK
_10020
tgt
queA
citB
comP
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.4
-1.2
-0.1
-0.3
+0.2
pH
R2A_PIPES pH 4.25
-0.7
-0.3
-0.1
-0.1
-0.0
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.8
-0.3
+0.1
-0.1
-0.2
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.3
-0.6
+0.1
-0.0
-0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.7
-0.3
-0.1
+0.0
+0.1
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.5
-0.2
-0.3
-0.0
-0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.4
-0.7
-0.2
+0.1
+0.3
stress
R2A_PIPES with Cadmium chloride 128 uM
-0.1
-0.8
-0.1
-0.1
+0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.3
-0.4
-0.1
-0.1
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.9
+0.1
+0.2
-0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.6
-0.3
+0.1
-0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.5
+0.2
-0.0
+0.1
no stress control
no stress control
-0.2
-0.0
-0.2
-0.1
-0.0
no stress control
no stress control
-0.3
-0.1
-0.1
-0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
+0.1
-0.1
-0.1
+0.2
no stress control
no stress control
-0.1
-0.3
-0.1
-0.0
-0.1
no stress control
no stress control
-0.4
+0.1
-0.1
-0.2
+0.0
pH
R2A_PIPES pH 4
-0.1
-0.4
+0.1
-0.2
+0.1
no stress control
no stress control
-0.2
-0.3
-0.0
-0.0
+0.0
no stress control
no stress control
+0.0
-0.3
-0.1
-0.0
+0.0
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.0
-0.0
+0.0
pH
R2A_PIPES pH 4.25
+0.1
-0.2
-0.0
-0.0
-0.1
no stress control
no stress control
-0.4
-0.4
+0.4
+0.1
+0.1
no stress control
no stress control
-0.1
-0.3
+0.1
-0.2
+0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.3
+0.0
-0.2
-0.1
pH
R2A_PIPES pH 4.5
-0.2
+0.0
-0.4
+0.1
+0.2
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.5
+0.1
+0.1
+0.0
+0.2
no stress control
no stress control
-0.6
+0.3
+0.1
-0.0
+0.2
pH
R2A_PIPES pH 4
-0.1
+0.4
+0.0
-0.1
-0.1
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